miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22576 5' -53.6 NC_005091.1 + 51556 0.66 0.778365
Target:  5'- uGCGAucCGCGCGGCA--UCGCcaagUGgGCg -3'
miRNA:   3'- uCGCU--GUGCGUCGUguAGUGa---ACgCG- -5'
22576 5' -53.6 NC_005091.1 + 17138 0.66 0.817597
Target:  5'- gAGC-ACGCGCAGCGgCAUUACgUGUu- -3'
miRNA:   3'- -UCGcUGUGCGUCGU-GUAGUGaACGcg -5'
22576 5' -53.6 NC_005091.1 + 52081 0.66 0.808063
Target:  5'- uGCGACGcCGUAGCGCcgaccAUCGCgaGCu- -3'
miRNA:   3'- uCGCUGU-GCGUCGUG-----UAGUGaaCGcg -5'
22576 5' -53.6 NC_005091.1 + 9201 0.66 0.808063
Target:  5'- uGGaCGACAUacauucuCGGCACAUCGgggUUGCGCu -3'
miRNA:   3'- -UC-GCUGUGc------GUCGUGUAGUg--AACGCG- -5'
22576 5' -53.6 NC_005091.1 + 30699 0.66 0.808063
Target:  5'- --aGGCACGCAGUGCuUCg---GCGCg -3'
miRNA:   3'- ucgCUGUGCGUCGUGuAGugaaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 51658 0.66 0.798339
Target:  5'- cGCGcccguCACGCGacGCACGaCACaaUGCGCa -3'
miRNA:   3'- uCGCu----GUGCGU--CGUGUaGUGa-ACGCG- -5'
22576 5' -53.6 NC_005091.1 + 24410 0.66 0.798339
Target:  5'- cGGCGGCACGacggucgacggcCAGCcUAUCGCcgcgaucaagGCGCa -3'
miRNA:   3'- -UCGCUGUGC------------GUCGuGUAGUGaa--------CGCG- -5'
22576 5' -53.6 NC_005091.1 + 42659 0.66 0.797357
Target:  5'- gAGCG-UGCGCGGCGCGgacaagcgucuucUCGgCgaGCGCg -3'
miRNA:   3'- -UCGCuGUGCGUCGUGU-------------AGU-GaaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 46087 0.66 0.788436
Target:  5'- -cCGGCGCGguGCGCGagCGCUUcuucaGCGUc -3'
miRNA:   3'- ucGCUGUGCguCGUGUa-GUGAA-----CGCG- -5'
22576 5' -53.6 NC_005091.1 + 14596 0.66 0.788436
Target:  5'- -cCGGCAUcgaGCGGCACGcUUACcgGCGCa -3'
miRNA:   3'- ucGCUGUG---CGUCGUGU-AGUGaaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 44285 0.69 0.626367
Target:  5'- aGGCGAagACGCcGCAUAcggCACUgucGCGCa -3'
miRNA:   3'- -UCGCUg-UGCGuCGUGUa--GUGAa--CGCG- -5'
22576 5' -53.6 NC_005091.1 + 552 0.66 0.768137
Target:  5'- --gGACG-GCGGCuuGUCGCcUGCGCg -3'
miRNA:   3'- ucgCUGUgCGUCGugUAGUGaACGCG- -5'
22576 5' -53.6 NC_005091.1 + 57946 0.66 0.768137
Target:  5'- --gGACG-GCGGCuuGUCGCcUGCGCg -3'
miRNA:   3'- ucgCUGUgCGUCGugUAGUGaACGCG- -5'
22576 5' -53.6 NC_005091.1 + 14319 0.67 0.76193
Target:  5'- -aCGACACGCAaggcggcucgaccguGCcCGUCACgaUGCGUa -3'
miRNA:   3'- ucGCUGUGCGU---------------CGuGUAGUGa-ACGCG- -5'
22576 5' -53.6 NC_005091.1 + 53148 0.67 0.75672
Target:  5'- cGCGACcaacguuACGgGGCGCAUCcugaUUGCGg -3'
miRNA:   3'- uCGCUG-------UGCgUCGUGUAGug--AACGCg -5'
22576 5' -53.6 NC_005091.1 + 28358 0.67 0.74726
Target:  5'- aGGCGAagguCACGCaagccgccAGCGCGUCGCcggUUGCa- -3'
miRNA:   3'- -UCGCU----GUGCG--------UCGUGUAGUG---AACGcg -5'
22576 5' -53.6 NC_005091.1 + 38142 0.67 0.715071
Target:  5'- aGGCGcaACGCGCAGgACgAUCuCUUcGUGCg -3'
miRNA:   3'- -UCGC--UGUGCGUCgUG-UAGuGAA-CGCG- -5'
22576 5' -53.6 NC_005091.1 + 29368 0.68 0.704156
Target:  5'- cGGCGAaACGCuGCACGcgACggaugGCGCg -3'
miRNA:   3'- -UCGCUgUGCGuCGUGUagUGaa---CGCG- -5'
22576 5' -53.6 NC_005091.1 + 33433 0.68 0.703061
Target:  5'- cGGCGACggacgcgACGCAGCaaccgGCAUUgccgaagacccgGCUgcUGCGCa -3'
miRNA:   3'- -UCGCUG-------UGCGUCG-----UGUAG------------UGA--ACGCG- -5'
22576 5' -53.6 NC_005091.1 + 5919 0.68 0.693169
Target:  5'- uGCG-CACGCcGCGCAcCGCUucgagccgugcUGCGUa -3'
miRNA:   3'- uCGCuGUGCGuCGUGUaGUGA-----------ACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.