miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22576 5' -53.6 NC_005091.1 + 25632 0.66 0.798339
Target:  5'- uGCGGCGgGCAGCcgAUCGCcgagcuggccGCGCa -3'
miRNA:   3'- uCGCUGUgCGUCGugUAGUGaa--------CGCG- -5'
22576 5' -53.6 NC_005091.1 + 26408 0.75 0.288042
Target:  5'- uGCGGCAgcCGCAGCcuGCGUUGCcUGCGCc -3'
miRNA:   3'- uCGCUGU--GCGUCG--UGUAGUGaACGCG- -5'
22576 5' -53.6 NC_005091.1 + 26660 0.76 0.266644
Target:  5'- cGGCGGCccgGCGUugAGCGCAUCAC--GCGCg -3'
miRNA:   3'- -UCGCUG---UGCG--UCGUGUAGUGaaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 28267 0.74 0.343147
Target:  5'- cGGCGACGCGCuGGCG----GCUUGCGUg -3'
miRNA:   3'- -UCGCUGUGCG-UCGUguagUGAACGCG- -5'
22576 5' -53.6 NC_005091.1 + 28358 0.67 0.74726
Target:  5'- aGGCGAagguCACGCaagccgccAGCGCGUCGCcggUUGCa- -3'
miRNA:   3'- -UCGCU----GUGCG--------UCGUGUAGUG---AACGcg -5'
22576 5' -53.6 NC_005091.1 + 29368 0.68 0.704156
Target:  5'- cGGCGAaACGCuGCACGcgACggaugGCGCg -3'
miRNA:   3'- -UCGCUgUGCGuCGUGUagUGaa---CGCG- -5'
22576 5' -53.6 NC_005091.1 + 29488 0.67 0.724822
Target:  5'- gAGCGACguaggACGCuGGCGCGcgccgaUCACagcuucgaggucgUUGCGCg -3'
miRNA:   3'- -UCGCUG-----UGCG-UCGUGU------AGUG-------------AACGCG- -5'
22576 5' -53.6 NC_005091.1 + 30516 0.66 0.817597
Target:  5'- cAGCGGCGCGCucuGCGUCAUgaGCa- -3'
miRNA:   3'- -UCGCUGUGCGucgUGUAGUGaaCGcg -5'
22576 5' -53.6 NC_005091.1 + 30699 0.66 0.808063
Target:  5'- --aGGCACGCAGUGCuUCg---GCGCg -3'
miRNA:   3'- ucgCUGUGCGUCGUGuAGugaaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 31318 0.73 0.386937
Target:  5'- cAGCGAuCACGCGGC-CuugCACguucgGCGCg -3'
miRNA:   3'- -UCGCU-GUGCGUCGuGua-GUGaa---CGCG- -5'
22576 5' -53.6 NC_005091.1 + 32045 0.72 0.434251
Target:  5'- gAGCGACGCgaGCAGCACGUUGC---CGCc -3'
miRNA:   3'- -UCGCUGUG--CGUCGUGUAGUGaacGCG- -5'
22576 5' -53.6 NC_005091.1 + 32207 0.69 0.626367
Target:  5'- uGCGGCG-GCAGCgaGCAUCAcCUUcGCGUc -3'
miRNA:   3'- uCGCUGUgCGUCG--UGUAGU-GAA-CGCG- -5'
22576 5' -53.6 NC_005091.1 + 33223 0.66 0.768137
Target:  5'- cGGCGuaAUGCGCGGCGacCAUCuGCccGCGCa -3'
miRNA:   3'- -UCGC--UGUGCGUCGU--GUAG-UGaaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 33433 0.68 0.703061
Target:  5'- cGGCGACggacgcgACGCAGCaaccgGCAUUgccgaagacccgGCUgcUGCGCa -3'
miRNA:   3'- -UCGCUG-------UGCGUCG-----UGUAG------------UGA--ACGCG- -5'
22576 5' -53.6 NC_005091.1 + 33514 0.71 0.516363
Target:  5'- gAGCuuCGCGCAGCGCGcUCGCgagGaCGCc -3'
miRNA:   3'- -UCGcuGUGCGUCGUGU-AGUGaa-C-GCG- -5'
22576 5' -53.6 NC_005091.1 + 33706 0.74 0.360226
Target:  5'- cGCGAgGCGaucggcGCACAUCuuCUUGCGCc -3'
miRNA:   3'- uCGCUgUGCgu----CGUGUAGu-GAACGCG- -5'
22576 5' -53.6 NC_005091.1 + 33820 0.71 0.527086
Target:  5'- cGCGAUgACGCGGCGCuuccUCGaaggGCGCa -3'
miRNA:   3'- uCGCUG-UGCGUCGUGu---AGUgaa-CGCG- -5'
22576 5' -53.6 NC_005091.1 + 34436 0.69 0.59289
Target:  5'- cGCGGCGUGCAGUACGaCAa--GCGCg -3'
miRNA:   3'- uCGCUGUGCGUCGUGUaGUgaaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 35123 0.67 0.757765
Target:  5'- gAGCGGCcggucaGCAGCuugugguacGCGUCGCg-GCGCc -3'
miRNA:   3'- -UCGCUGug----CGUCG---------UGUAGUGaaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 36391 0.68 0.671023
Target:  5'- gGGuCGGCACGCcGCGa--CGCUcGCGCa -3'
miRNA:   3'- -UC-GCUGUGCGuCGUguaGUGAaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.