miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22576 5' -53.6 NC_005091.1 + 10031 0.69 0.604028
Target:  5'- cGGCGAcCACGUuGUuCAUCGCcggGCGCu -3'
miRNA:   3'- -UCGCU-GUGCGuCGuGUAGUGaa-CGCG- -5'
22576 5' -53.6 NC_005091.1 + 41967 0.69 0.59289
Target:  5'- cGCGAgGucgaGCAGCACGUCGCcgUG-GCa -3'
miRNA:   3'- uCGCUgUg---CGUCGUGUAGUGa-ACgCG- -5'
22576 5' -53.6 NC_005091.1 + 18118 0.69 0.59289
Target:  5'- uGCGGCACGCugaucgagaaCACGUCGgUcgGCGCg -3'
miRNA:   3'- uCGCUGUGCGuc--------GUGUAGUgAa-CGCG- -5'
22576 5' -53.6 NC_005091.1 + 51428 0.69 0.589555
Target:  5'- cGCGACugcacGCGCAGCGucgacagccccgguCGUCGCUUcCGCc -3'
miRNA:   3'- uCGCUG-----UGCGUCGU--------------GUAGUGAAcGCG- -5'
22576 5' -53.6 NC_005091.1 + 50945 0.7 0.559719
Target:  5'- cAGCGAC-CGCaAGCGCGg----UGCGCa -3'
miRNA:   3'- -UCGCUGuGCG-UCGUGUagugaACGCG- -5'
22576 5' -53.6 NC_005091.1 + 55829 0.7 0.557525
Target:  5'- cGCGACGaagaGCGGCGCAgccggucagcaACUgGCGCa -3'
miRNA:   3'- uCGCUGUg---CGUCGUGUag---------UGAaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 51595 0.7 0.548772
Target:  5'- --gGGCGCGCagaAGCGCggCACggGCGCg -3'
miRNA:   3'- ucgCUGUGCG---UCGUGuaGUGaaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 10142 0.71 0.49519
Target:  5'- cGcCGGCACGCgccgAGCGCcgCACguuccugaugUGCGCg -3'
miRNA:   3'- uC-GCUGUGCG----UCGUGuaGUGa---------ACGCG- -5'
22576 5' -53.6 NC_005091.1 + 1133 0.72 0.464199
Target:  5'- uGCGugGCGUgaaGGCGCAUUACgcuaacugGCGUg -3'
miRNA:   3'- uCGCugUGCG---UCGUGUAGUGaa------CGCG- -5'
22576 5' -53.6 NC_005091.1 + 33514 0.71 0.516363
Target:  5'- gAGCuuCGCGCAGCGCGcUCGCgagGaCGCc -3'
miRNA:   3'- -UCGcuGUGCGUCGUGU-AGUGaa-C-GCG- -5'
22576 5' -53.6 NC_005091.1 + 37573 0.71 0.516363
Target:  5'- gAGCGACAaGCAGCGCGccaUCAUU--CGCa -3'
miRNA:   3'- -UCGCUGUgCGUCGUGU---AGUGAacGCG- -5'
22576 5' -53.6 NC_005091.1 + 24790 0.71 0.527086
Target:  5'- gAGCaGGCcaaaacacucGCGCAGCGCAaccUCGCUUcgauucGCGCg -3'
miRNA:   3'- -UCG-CUG----------UGCGUCGUGU---AGUGAA------CGCG- -5'
22576 5' -53.6 NC_005091.1 + 33820 0.71 0.527086
Target:  5'- cGCGAUgACGCGGCGCuuccUCGaaggGCGCa -3'
miRNA:   3'- uCGCUG-UGCGUCGUGu---AGUgaa-CGCG- -5'
22576 5' -53.6 NC_005091.1 + 23350 0.7 0.537891
Target:  5'- gGGCGGCaugucGCGCAGUGCGUCGgcgagcuggUUUGCGa -3'
miRNA:   3'- -UCGCUG-----UGCGUCGUGUAGU---------GAACGCg -5'
22576 5' -53.6 NC_005091.1 + 22298 0.7 0.537891
Target:  5'- cAGCucuACGCGCAGCAguUUGCUUucuucGCGCa -3'
miRNA:   3'- -UCGc--UGUGCGUCGUguAGUGAA-----CGCG- -5'
22576 5' -53.6 NC_005091.1 + 13896 0.7 0.548772
Target:  5'- cAGCGugACGguCAGCACGaCGCUcguUGCGg -3'
miRNA:   3'- -UCGCugUGC--GUCGUGUaGUGA---ACGCg -5'
22576 5' -53.6 NC_005091.1 + 34436 0.69 0.59289
Target:  5'- cGCGGCGUGCAGUACGaCAa--GCGCg -3'
miRNA:   3'- uCGCUGUGCGUCGUGUaGUgaaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 5295 0.69 0.59289
Target:  5'- gGGCGGC-CGUuGCACuccuugCACcgUGCGCg -3'
miRNA:   3'- -UCGCUGuGCGuCGUGua----GUGa-ACGCG- -5'
22576 5' -53.6 NC_005091.1 + 53569 0.69 0.604028
Target:  5'- uGGCGACacgauACGCGGUGuCGUCuuccGCUUGcCGCa -3'
miRNA:   3'- -UCGCUG-----UGCGUCGU-GUAG----UGAAC-GCG- -5'
22576 5' -53.6 NC_005091.1 + 23501 0.69 0.615189
Target:  5'- uGGCGACGCGCgcggcgauGGCGCugcucgGUCugUUcggcgGCGCu -3'
miRNA:   3'- -UCGCUGUGCG--------UCGUG------UAGugAA-----CGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.