Results 41 - 60 of 99 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 10031 | 0.69 | 0.604028 |
Target: 5'- cGGCGAcCACGUuGUuCAUCGCcggGCGCu -3' miRNA: 3'- -UCGCU-GUGCGuCGuGUAGUGaa-CGCG- -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 41967 | 0.69 | 0.59289 |
Target: 5'- cGCGAgGucgaGCAGCACGUCGCcgUG-GCa -3' miRNA: 3'- uCGCUgUg---CGUCGUGUAGUGa-ACgCG- -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 18118 | 0.69 | 0.59289 |
Target: 5'- uGCGGCACGCugaucgagaaCACGUCGgUcgGCGCg -3' miRNA: 3'- uCGCUGUGCGuc--------GUGUAGUgAa-CGCG- -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 51428 | 0.69 | 0.589555 |
Target: 5'- cGCGACugcacGCGCAGCGucgacagccccgguCGUCGCUUcCGCc -3' miRNA: 3'- uCGCUG-----UGCGUCGU--------------GUAGUGAAcGCG- -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 50945 | 0.7 | 0.559719 |
Target: 5'- cAGCGAC-CGCaAGCGCGg----UGCGCa -3' miRNA: 3'- -UCGCUGuGCG-UCGUGUagugaACGCG- -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 55829 | 0.7 | 0.557525 |
Target: 5'- cGCGACGaagaGCGGCGCAgccggucagcaACUgGCGCa -3' miRNA: 3'- uCGCUGUg---CGUCGUGUag---------UGAaCGCG- -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 51595 | 0.7 | 0.548772 |
Target: 5'- --gGGCGCGCagaAGCGCggCACggGCGCg -3' miRNA: 3'- ucgCUGUGCG---UCGUGuaGUGaaCGCG- -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 10142 | 0.71 | 0.49519 |
Target: 5'- cGcCGGCACGCgccgAGCGCcgCACguuccugaugUGCGCg -3' miRNA: 3'- uC-GCUGUGCG----UCGUGuaGUGa---------ACGCG- -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 1133 | 0.72 | 0.464199 |
Target: 5'- uGCGugGCGUgaaGGCGCAUUACgcuaacugGCGUg -3' miRNA: 3'- uCGCugUGCG---UCGUGUAGUGaa------CGCG- -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 33514 | 0.71 | 0.516363 |
Target: 5'- gAGCuuCGCGCAGCGCGcUCGCgagGaCGCc -3' miRNA: 3'- -UCGcuGUGCGUCGUGU-AGUGaa-C-GCG- -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 37573 | 0.71 | 0.516363 |
Target: 5'- gAGCGACAaGCAGCGCGccaUCAUU--CGCa -3' miRNA: 3'- -UCGCUGUgCGUCGUGU---AGUGAacGCG- -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 24790 | 0.71 | 0.527086 |
Target: 5'- gAGCaGGCcaaaacacucGCGCAGCGCAaccUCGCUUcgauucGCGCg -3' miRNA: 3'- -UCG-CUG----------UGCGUCGUGU---AGUGAA------CGCG- -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 33820 | 0.71 | 0.527086 |
Target: 5'- cGCGAUgACGCGGCGCuuccUCGaaggGCGCa -3' miRNA: 3'- uCGCUG-UGCGUCGUGu---AGUgaa-CGCG- -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 23350 | 0.7 | 0.537891 |
Target: 5'- gGGCGGCaugucGCGCAGUGCGUCGgcgagcuggUUUGCGa -3' miRNA: 3'- -UCGCUG-----UGCGUCGUGUAGU---------GAACGCg -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 22298 | 0.7 | 0.537891 |
Target: 5'- cAGCucuACGCGCAGCAguUUGCUUucuucGCGCa -3' miRNA: 3'- -UCGc--UGUGCGUCGUguAGUGAA-----CGCG- -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 13896 | 0.7 | 0.548772 |
Target: 5'- cAGCGugACGguCAGCACGaCGCUcguUGCGg -3' miRNA: 3'- -UCGCugUGC--GUCGUGUaGUGA---ACGCg -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 34436 | 0.69 | 0.59289 |
Target: 5'- cGCGGCGUGCAGUACGaCAa--GCGCg -3' miRNA: 3'- uCGCUGUGCGUCGUGUaGUgaaCGCG- -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 5295 | 0.69 | 0.59289 |
Target: 5'- gGGCGGC-CGUuGCACuccuugCACcgUGCGCg -3' miRNA: 3'- -UCGCUGuGCGuCGUGua----GUGa-ACGCG- -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 53569 | 0.69 | 0.604028 |
Target: 5'- uGGCGACacgauACGCGGUGuCGUCuuccGCUUGcCGCa -3' miRNA: 3'- -UCGCUG-----UGCGUCGU-GUAG----UGAAC-GCG- -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 23501 | 0.69 | 0.615189 |
Target: 5'- uGGCGACGCGCgcggcgauGGCGCugcucgGUCugUUcggcgGCGCu -3' miRNA: 3'- -UCGCUGUGCG--------UCGUG------UAGugAA-----CGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home