miRNA display CGI


Results 61 - 80 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22576 5' -53.6 NC_005091.1 + 36418 0.75 0.310766
Target:  5'- cGGCcGC-CGCAGCACggCGCUuccaUGCGCa -3'
miRNA:   3'- -UCGcUGuGCGUCGUGuaGUGA----ACGCG- -5'
22576 5' -53.6 NC_005091.1 + 37573 0.71 0.516363
Target:  5'- gAGCGACAaGCAGCGCGccaUCAUU--CGCa -3'
miRNA:   3'- -UCGCUGUgCGUCGUGU---AGUGAacGCG- -5'
22576 5' -53.6 NC_005091.1 + 37793 0.66 0.8119
Target:  5'- uGGCGcuucccgcacGCGCGCAGCccuugaauccguuuCGUCACggUGCGg -3'
miRNA:   3'- -UCGC----------UGUGCGUCGu-------------GUAGUGa-ACGCg -5'
22576 5' -53.6 NC_005091.1 + 38142 0.67 0.715071
Target:  5'- aGGCGcaACGCGCAGgACgAUCuCUUcGUGCg -3'
miRNA:   3'- -UCGC--UGUGCGUCgUG-UAGuGAA-CGCG- -5'
22576 5' -53.6 NC_005091.1 + 39338 0.78 0.210137
Target:  5'- uAGCGACACGCAGCggcGCgAUCACgagacaGUGCu -3'
miRNA:   3'- -UCGCUGUGCGUCG---UG-UAGUGaa----CGCG- -5'
22576 5' -53.6 NC_005091.1 + 39711 0.68 0.659888
Target:  5'- aAGCGACAC-CAGUACAacaagCACgacgagaUGCGUc -3'
miRNA:   3'- -UCGCUGUGcGUCGUGUa----GUGa------ACGCG- -5'
22576 5' -53.6 NC_005091.1 + 39880 0.66 0.808063
Target:  5'- uGCGAUagaACGCGGCcgacCAUCcgGCU-GCGCc -3'
miRNA:   3'- uCGCUG---UGCGUCGu---GUAG--UGAaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 39961 0.72 0.424519
Target:  5'- cAG-GACAUGCAGCcccuucgacGCGUCGCcgaucUUGCGCa -3'
miRNA:   3'- -UCgCUGUGCGUCG---------UGUAGUG-----AACGCG- -5'
22576 5' -53.6 NC_005091.1 + 41053 0.74 0.368986
Target:  5'- cGGaGGCGCGCAGCGCA-CGCa-GCGCu -3'
miRNA:   3'- -UCgCUGUGCGUCGUGUaGUGaaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 41627 0.66 0.808063
Target:  5'- cAGCGA-ACGaCAGCAUGUaCGCacGCGCc -3'
miRNA:   3'- -UCGCUgUGC-GUCGUGUA-GUGaaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 41967 0.69 0.59289
Target:  5'- cGCGAgGucgaGCAGCACGUCGCcgUG-GCa -3'
miRNA:   3'- uCGCUgUg---CGUCGUGUAGUGa-ACgCG- -5'
22576 5' -53.6 NC_005091.1 + 42659 0.66 0.797357
Target:  5'- gAGCG-UGCGCGGCGCGgacaagcgucuucUCGgCgaGCGCg -3'
miRNA:   3'- -UCGCuGUGCGUCGUGU-------------AGU-GaaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 44198 0.66 0.788436
Target:  5'- cGCGACAgugccguaUGCGGCGuCuUCGCcUGCGUu -3'
miRNA:   3'- uCGCUGU--------GCGUCGU-GuAGUGaACGCG- -5'
22576 5' -53.6 NC_005091.1 + 44285 0.69 0.626367
Target:  5'- aGGCGAagACGCcGCAUAcggCACUgucGCGCa -3'
miRNA:   3'- -UCGCUg-UGCGuCGUGUa--GUGAa--CGCG- -5'
22576 5' -53.6 NC_005091.1 + 46087 0.66 0.788436
Target:  5'- -cCGGCGCGguGCGCGagCGCUUcuucaGCGUc -3'
miRNA:   3'- ucGCUGUGCguCGUGUa-GUGAA-----CGCG- -5'
22576 5' -53.6 NC_005091.1 + 48671 0.68 0.704156
Target:  5'- cGUGAUACagGCAuGC-CGUCAUgcgUGCGCa -3'
miRNA:   3'- uCGCUGUG--CGU-CGuGUAGUGa--ACGCG- -5'
22576 5' -53.6 NC_005091.1 + 49279 0.66 0.768137
Target:  5'- -aCGAgGCGCAGUuCGUCggGCgUGCGCc -3'
miRNA:   3'- ucGCUgUGCGUCGuGUAG--UGaACGCG- -5'
22576 5' -53.6 NC_005091.1 + 49714 0.66 0.807099
Target:  5'- cGCGuagcucuGCAUGCggGGCACGUCgGCcgUGCGUg -3'
miRNA:   3'- uCGC-------UGUGCG--UCGUGUAG-UGa-ACGCG- -5'
22576 5' -53.6 NC_005091.1 + 50945 0.7 0.559719
Target:  5'- cAGCGAC-CGCaAGCGCGg----UGCGCa -3'
miRNA:   3'- -UCGCUGuGCG-UCGUGUagugaACGCG- -5'
22576 5' -53.6 NC_005091.1 + 51150 0.73 0.390595
Target:  5'- cAGCGACGCGCGGCGauugacggccguucCAUCaaugaaaaucgcccACggGCGCg -3'
miRNA:   3'- -UCGCUGUGCGUCGU--------------GUAG--------------UGaaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.