miRNA display CGI


Results 61 - 80 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22576 5' -53.6 NC_005091.1 + 44285 0.69 0.626367
Target:  5'- aGGCGAagACGCcGCAUAcggCACUgucGCGCa -3'
miRNA:   3'- -UCGCUg-UGCGuCGUGUa--GUGAa--CGCG- -5'
22576 5' -53.6 NC_005091.1 + 16051 0.71 0.485791
Target:  5'- gAGCGACAaGCAGguCAUCGCguggaacgccgcgaGCGCc -3'
miRNA:   3'- -UCGCUGUgCGUCguGUAGUGaa------------CGCG- -5'
22576 5' -53.6 NC_005091.1 + 20337 0.71 0.484751
Target:  5'- cGGCGACGCGuCGGCcgauuCgAUCACgcucgacUGCGCg -3'
miRNA:   3'- -UCGCUGUGC-GUCGu----G-UAGUGa------ACGCG- -5'
22576 5' -53.6 NC_005091.1 + 10249 0.72 0.474419
Target:  5'- aGGCagGACACGC-GCACAUCaggaagugcggcGCUcgGCGCg -3'
miRNA:   3'- -UCG--CUGUGCGuCGUGUAG------------UGAa-CGCG- -5'
22576 5' -53.6 NC_005091.1 + 9631 0.72 0.434251
Target:  5'- uGcCGACACgGCAGCcuCGUCACggGUGCg -3'
miRNA:   3'- uC-GCUGUG-CGUCGu-GUAGUGaaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 55716 0.72 0.424519
Target:  5'- cGgGACACGUuGCACGUCgucaucccgGCUUGcCGCa -3'
miRNA:   3'- uCgCUGUGCGuCGUGUAG---------UGAAC-GCG- -5'
22576 5' -53.6 NC_005091.1 + 52995 0.73 0.37789
Target:  5'- uGGCG-CAUGUGGCACGUCGaUUGCGa -3'
miRNA:   3'- -UCGCuGUGCGUCGUGUAGUgAACGCg -5'
22576 5' -53.6 NC_005091.1 + 41053 0.74 0.368986
Target:  5'- cGGaGGCGCGCAGCGCA-CGCa-GCGCu -3'
miRNA:   3'- -UCgCUGUGCGUCGUGUaGUGaaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 55993 0.74 0.368986
Target:  5'- uGCG-CACGCAGUugGUCGgcCUgcUGCGCc -3'
miRNA:   3'- uCGCuGUGCGUCGugUAGU--GA--ACGCG- -5'
22576 5' -53.6 NC_005091.1 + 55022 0.74 0.351613
Target:  5'- cGCGGCGCuugGCgAGCGCGUUGCggcgGCGCa -3'
miRNA:   3'- uCGCUGUG---CG-UCGUGUAGUGaa--CGCG- -5'
22576 5' -53.6 NC_005091.1 + 21593 0.76 0.259803
Target:  5'- aGGCGACGCgGCAGaGCA-CGCUUGCGg -3'
miRNA:   3'- -UCGCUGUG-CGUCgUGUaGUGAACGCg -5'
22576 5' -53.6 NC_005091.1 + 10918 0.77 0.240137
Target:  5'- -aUGACACGCAGCGCGuacgggucgUCGCUgccgagugcaaUGCGCg -3'
miRNA:   3'- ucGCUGUGCGUCGUGU---------AGUGA-----------ACGCG- -5'
22576 5' -53.6 NC_005091.1 + 2209 0.79 0.168872
Target:  5'- cGGcCGACGCGCuuaccGGCAcCAUCAgUUGCGCg -3'
miRNA:   3'- -UC-GCUGUGCG-----UCGU-GUAGUgAACGCG- -5'
22576 5' -53.6 NC_005091.1 + 19317 1.13 0.000777
Target:  5'- cAGCGACACGCAGCACAUCACUUGCGCg -3'
miRNA:   3'- -UCGCUGUGCGUCGUGUAGUGAACGCG- -5'
22576 5' -53.6 NC_005091.1 + 57946 0.66 0.768137
Target:  5'- --gGACG-GCGGCuuGUCGCcUGCGCg -3'
miRNA:   3'- ucgCUGUgCGUCGugUAGUGaACGCG- -5'
22576 5' -53.6 NC_005091.1 + 883 0.66 0.817597
Target:  5'- cGCGGCAgCGCAGCGCAcgagaucggcauUCAgUUGaaaGg -3'
miRNA:   3'- uCGCUGU-GCGUCGUGU------------AGUgAACg--Cg -5'
22576 5' -53.6 NC_005091.1 + 17138 0.66 0.817597
Target:  5'- gAGC-ACGCGCAGCGgCAUUACgUGUu- -3'
miRNA:   3'- -UCGcUGUGCGUCGU-GUAGUGaACGcg -5'
22576 5' -53.6 NC_005091.1 + 52081 0.66 0.808063
Target:  5'- uGCGACGcCGUAGCGCcgaccAUCGCgaGCu- -3'
miRNA:   3'- uCGCUGU-GCGUCGUG-----UAGUGaaCGcg -5'
22576 5' -53.6 NC_005091.1 + 9201 0.66 0.808063
Target:  5'- uGGaCGACAUacauucuCGGCACAUCGgggUUGCGCu -3'
miRNA:   3'- -UC-GCUGUGc------GUCGUGUAGUg--AACGCG- -5'
22576 5' -53.6 NC_005091.1 + 30699 0.66 0.808063
Target:  5'- --aGGCACGCAGUGCuUCg---GCGCg -3'
miRNA:   3'- ucgCUGUGCGUCGUGuAGugaaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.