miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22577 3' -56.7 NC_005091.1 + 18137 0.66 0.636054
Target:  5'- -aCACG-UCGGuCgGCGCGaGCUUCGCg -3'
miRNA:   3'- uaGUGCgAGCU-GaCGCGC-CGAAGUGa -5'
22577 3' -56.7 NC_005091.1 + 11667 0.66 0.603062
Target:  5'- aGUCGCcggccuucagcgGCUCGAUgGCGCGGCUcucuuUCAg- -3'
miRNA:   3'- -UAGUG------------CGAGCUGaCGCGCCGA-----AGUga -5'
22577 3' -56.7 NC_005091.1 + 23515 0.66 0.603062
Target:  5'- cAUCAUGCagaucauggCGACgcGCGCGGCgauggCGCUg -3'
miRNA:   3'- -UAGUGCGa--------GCUGa-CGCGCCGaa---GUGA- -5'
22577 3' -56.7 NC_005091.1 + 6076 0.67 0.548684
Target:  5'- uUCGCGUcCGACUGuCGCGccGCUUCGg- -3'
miRNA:   3'- uAGUGCGaGCUGAC-GCGC--CGAAGUga -5'
22577 3' -56.7 NC_005091.1 + 49784 0.67 0.527338
Target:  5'- -gCACGCUCGGCUcGauCGGCUUCu-- -3'
miRNA:   3'- uaGUGCGAGCUGA-CgcGCCGAAGuga -5'
22577 3' -56.7 NC_005091.1 + 52694 0.68 0.465396
Target:  5'- -gCACGC-CGGCcagUGCGaCGGCUUUGCg -3'
miRNA:   3'- uaGUGCGaGCUG---ACGC-GCCGAAGUGa -5'
22577 3' -56.7 NC_005091.1 + 4820 0.69 0.416793
Target:  5'- uUCGCGCUCGGC-GCGgCGGCaacggUCAa- -3'
miRNA:   3'- uAGUGCGAGCUGaCGC-GCCGa----AGUga -5'
22577 3' -56.7 NC_005091.1 + 5832 0.7 0.407449
Target:  5'- -gCACgGCUCGAagcggUGCGCGGCgugCGCa -3'
miRNA:   3'- uaGUG-CGAGCUg----ACGCGCCGaa-GUGa -5'
22577 3' -56.7 NC_005091.1 + 49981 0.7 0.398238
Target:  5'- cGUUGCGCUCGAUU-CGuCGGCUaUCACa -3'
miRNA:   3'- -UAGUGCGAGCUGAcGC-GCCGA-AGUGa -5'
22577 3' -56.7 NC_005091.1 + 11338 0.73 0.243596
Target:  5'- -cCGCGUUCGACUGCGCauguGCgUCACg -3'
miRNA:   3'- uaGUGCGAGCUGACGCGc---CGaAGUGa -5'
22577 3' -56.7 NC_005091.1 + 20316 1.06 0.001037
Target:  5'- gAUCACGCUCGACUGCGCGGCUUCACUg -3'
miRNA:   3'- -UAGUGCGAGCUGACGCGCCGAAGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.