miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22577 5' -59.5 NC_005091.1 + 52087 0.66 0.467197
Target:  5'- --cGCAuUGGCGCGGccguAUGCCGUgAAa -3'
miRNA:   3'- cuuCGUcACCGCGCCu---UGCGGCGgUU- -5'
22577 5' -59.5 NC_005091.1 + 20203 0.66 0.457336
Target:  5'- cGAAGCGgacGUGGCGUGGAugggcACGgUGuCCGAu -3'
miRNA:   3'- -CUUCGU---CACCGCGCCU-----UGCgGC-GGUU- -5'
22577 5' -59.5 NC_005091.1 + 7307 0.66 0.447587
Target:  5'- aGAGC-GUGGCGUugaagaccGGAACGUCgGCCGc -3'
miRNA:   3'- cUUCGuCACCGCG--------CCUUGCGG-CGGUu -5'
22577 5' -59.5 NC_005091.1 + 23376 0.66 0.437954
Target:  5'- -cGGCAGccggGGCaGCcGAcgcaGCGCCGCCGAa -3'
miRNA:   3'- cuUCGUCa---CCG-CGcCU----UGCGGCGGUU- -5'
22577 5' -59.5 NC_005091.1 + 13473 0.68 0.365441
Target:  5'- uAGGCcGcgauacucgaaUGGCGaCGGuGCGCCGCCGAg -3'
miRNA:   3'- cUUCGuC-----------ACCGC-GCCuUGCGGCGGUU- -5'
22577 5' -59.5 NC_005091.1 + 44890 0.68 0.332423
Target:  5'- gGAAGCAGgcgguacgGGCgGCGGcAAgGCgGCCGAa -3'
miRNA:   3'- -CUUCGUCa-------CCG-CGCC-UUgCGgCGGUU- -5'
22577 5' -59.5 NC_005091.1 + 17720 0.69 0.304626
Target:  5'- aGAGGCugcgacaaaacgaccAGUGGCGU-GAAgGCCGCCGu -3'
miRNA:   3'- -CUUCG---------------UCACCGCGcCUUgCGGCGGUu -5'
22577 5' -59.5 NC_005091.1 + 26409 0.7 0.27312
Target:  5'- -uAGCGGccgGGCGCGaGcAgGCCGCCAGa -3'
miRNA:   3'- cuUCGUCa--CCGCGC-CuUgCGGCGGUU- -5'
22577 5' -59.5 NC_005091.1 + 29076 0.73 0.161892
Target:  5'- cGAGuGCAGUucGGCGCGGAGaCGCCuGCCc- -3'
miRNA:   3'- -CUU-CGUCA--CCGCGCCUU-GCGG-CGGuu -5'
22577 5' -59.5 NC_005091.1 + 16045 0.74 0.145221
Target:  5'- cAAGCAGgucaucGCGUGGAACGCCGCgAGc -3'
miRNA:   3'- cUUCGUCac----CGCGCCUUGCGGCGgUU- -5'
22577 5' -59.5 NC_005091.1 + 31718 0.75 0.110196
Target:  5'- --cGUAcUGGUGUGGGACGCCGCCGc -3'
miRNA:   3'- cuuCGUcACCGCGCCUUGCGGCGGUu -5'
22577 5' -59.5 NC_005091.1 + 45796 0.78 0.064412
Target:  5'- aGAGCAGUagccGGCGCGGcGCGCgGCCGAc -3'
miRNA:   3'- cUUCGUCA----CCGCGCCuUGCGgCGGUU- -5'
22577 5' -59.5 NC_005091.1 + 20281 1.05 0.000642
Target:  5'- uGAAGCAGUGGCGCGGAACGCCGCCAAc -3'
miRNA:   3'- -CUUCGUCACCGCGCCUUGCGGCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.