Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22578 | 5' | -48.2 | NC_005091.1 | + | 21101 | 1.14 | 0.002696 |
Target: 5'- cGUUCCCGCAUUCGACAACUCAAUCGCa -3' miRNA: 3'- -CAAGGGCGUAAGCUGUUGAGUUAGCG- -5' |
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22578 | 5' | -48.2 | NC_005091.1 | + | 39480 | 0.74 | 0.697284 |
Target: 5'- -gUCCaCGCAUUUGuccugauacgcauGCAGCUCGAUCGg -3' miRNA: 3'- caAGG-GCGUAAGC-------------UGUUGAGUUAGCg -5' |
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22578 | 5' | -48.2 | NC_005091.1 | + | 28551 | 0.73 | 0.742919 |
Target: 5'- --aCCgGCGaacuguacUUCGGCAACUCGccGUCGCu -3' miRNA: 3'- caaGGgCGU--------AAGCUGUUGAGU--UAGCG- -5' |
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22578 | 5' | -48.2 | NC_005091.1 | + | 1032 | 0.71 | 0.825236 |
Target: 5'- gGUUCCgGCA--CGACGGCUUccgGGUCGUa -3' miRNA: 3'- -CAAGGgCGUaaGCUGUUGAG---UUAGCG- -5' |
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22578 | 5' | -48.2 | NC_005091.1 | + | 843 | 0.71 | 0.838355 |
Target: 5'- -aUCCUGCGgccaugaaauaccCGGC-GCUCAAUCGCa -3' miRNA: 3'- caAGGGCGUaa-----------GCUGuUGAGUUAGCG- -5' |
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22578 | 5' | -48.2 | NC_005091.1 | + | 43068 | 0.71 | 0.852779 |
Target: 5'- -cUCCCGCGUgucugCGACAggaGCcaaGGUCGCc -3' miRNA: 3'- caAGGGCGUAa----GCUGU---UGag-UUAGCG- -5' |
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22578 | 5' | -48.2 | NC_005091.1 | + | 25681 | 0.7 | 0.900845 |
Target: 5'- --aCCUGCccuUUCGACAucaucugUUCGAUCGCg -3' miRNA: 3'- caaGGGCGu--AAGCUGUu------GAGUUAGCG- -5' |
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22578 | 5' | -48.2 | NC_005091.1 | + | 49817 | 0.69 | 0.907861 |
Target: 5'- -aUCgCCGCGUUCGugGCGGCUUGcgCGUu -3' miRNA: 3'- caAG-GGCGUAAGC--UGUUGAGUuaGCG- -5' |
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22578 | 5' | -48.2 | NC_005091.1 | + | 29244 | 0.69 | 0.926518 |
Target: 5'- --gCCCGUauagcagguagacGUuguUCGACAGCUUcGUCGCg -3' miRNA: 3'- caaGGGCG-------------UA---AGCUGUUGAGuUAGCG- -5' |
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22578 | 5' | -48.2 | NC_005091.1 | + | 4274 | 0.69 | 0.926518 |
Target: 5'- -cUCCUGCAagggcUGACGACUCAucccgugGUCGUg -3' miRNA: 3'- caAGGGCGUaa---GCUGUUGAGU-------UAGCG- -5' |
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22578 | 5' | -48.2 | NC_005091.1 | + | 34589 | 0.69 | 0.927117 |
Target: 5'- -aUUCCGCGU---ACAGCUCGAacuUCGCu -3' miRNA: 3'- caAGGGCGUAagcUGUUGAGUU---AGCG- -5' |
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22578 | 5' | -48.2 | NC_005091.1 | + | 50779 | 0.69 | 0.932932 |
Target: 5'- --aCaaGCAUggCGAC-GCUCAAUCGCc -3' miRNA: 3'- caaGggCGUAa-GCUGuUGAGUUAGCG- -5' |
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22578 | 5' | -48.2 | NC_005091.1 | + | 5421 | 0.68 | 0.938447 |
Target: 5'- aGUUCCUGCGgcagCG-CGAC-CGGUUGCu -3' miRNA: 3'- -CAAGGGCGUaa--GCuGUUGaGUUAGCG- -5' |
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22578 | 5' | -48.2 | NC_005091.1 | + | 3033 | 0.68 | 0.94858 |
Target: 5'- --gCCCGCAgagCGAgAACgCGAUuCGCg -3' miRNA: 3'- caaGGGCGUaa-GCUgUUGaGUUA-GCG- -5' |
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22578 | 5' | -48.2 | NC_005091.1 | + | 51437 | 0.68 | 0.94858 |
Target: 5'- --aCgCGCAgcgUCGACAGCccCGGUCGUc -3' miRNA: 3'- caaGgGCGUa--AGCUGUUGa-GUUAGCG- -5' |
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22578 | 5' | -48.2 | NC_005091.1 | + | 17379 | 0.68 | 0.953204 |
Target: 5'- uGUUCugCCGCg--CGACGAuCUCGAUUGUg -3' miRNA: 3'- -CAAG--GGCGuaaGCUGUU-GAGUUAGCG- -5' |
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22578 | 5' | -48.2 | NC_005091.1 | + | 2083 | 0.68 | 0.95754 |
Target: 5'- cGUUCgCCaGCAUggccgCGACAGCgUCGAUgUGCg -3' miRNA: 3'- -CAAG-GG-CGUAa----GCUGUUG-AGUUA-GCG- -5' |
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22578 | 5' | -48.2 | NC_005091.1 | + | 19903 | 0.68 | 0.95754 |
Target: 5'- --aCCCGCc-UCGGCGcACUCGAaccaaUCGCc -3' miRNA: 3'- caaGGGCGuaAGCUGU-UGAGUU-----AGCG- -5' |
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22578 | 5' | -48.2 | NC_005091.1 | + | 32352 | 0.67 | 0.961593 |
Target: 5'- ---aCgGCGUUCGGCGGC-CAGUUGUu -3' miRNA: 3'- caagGgCGUAAGCUGUUGaGUUAGCG- -5' |
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22578 | 5' | -48.2 | NC_005091.1 | + | 38739 | 0.67 | 0.965369 |
Target: 5'- cGUUCUCGCAUccCGgccGCAGCUUGuacguUCGCg -3' miRNA: 3'- -CAAGGGCGUAa-GC---UGUUGAGUu----AGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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