miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22579 3' -54.6 NC_005091.1 + 26091 0.66 0.775607
Target:  5'- -cGucgGCGUGCAGGgcGCGAUuaaccuugcggcgGGCGCa -3'
miRNA:   3'- gaCuuaCGCGCGUCC--UGCUA-------------UCGCGc -5'
22579 3' -54.6 NC_005091.1 + 36081 0.66 0.756219
Target:  5'- aUGuuucuCGCGCAGGACuucGGCGCGc -3'
miRNA:   3'- gACuuac-GCGCGUCCUGcuaUCGCGC- -5'
22579 3' -54.6 NC_005091.1 + 38135 0.66 0.745825
Target:  5'- ------aCGCGCAGGACGAUcucuucGUGCGu -3'
miRNA:   3'- gacuuacGCGCGUCCUGCUAu-----CGCGC- -5'
22579 3' -54.6 NC_005091.1 + 44626 0.66 0.735314
Target:  5'- -aGAAgacGCGgGCGGcGACGAaGGCGaCGg -3'
miRNA:   3'- gaCUUa--CGCgCGUC-CUGCUaUCGC-GC- -5'
22579 3' -54.6 NC_005091.1 + 34439 0.67 0.713992
Target:  5'- -cGAcgcgGCGUGCAGuACGAcaAGCGCGg -3'
miRNA:   3'- gaCUua--CGCGCGUCcUGCUa-UCGCGC- -5'
22579 3' -54.6 NC_005091.1 + 53167 0.67 0.703203
Target:  5'- gCUGua-GCGCGCGGGcGCGAgccuuccGGUGCa -3'
miRNA:   3'- -GACuuaCGCGCGUCC-UGCUa------UCGCGc -5'
22579 3' -54.6 NC_005091.1 + 12141 0.67 0.692344
Target:  5'- aUGAugGCGauCGGGACGA-AGCGCGc -3'
miRNA:   3'- gACUuaCGCgcGUCCUGCUaUCGCGC- -5'
22579 3' -54.6 NC_005091.1 + 48646 0.67 0.681427
Target:  5'- aCUGGcugGCGCGCAGGccCGAUgaggaucgcucGGgGCGg -3'
miRNA:   3'- -GACUua-CGCGCGUCCu-GCUA-----------UCgCGC- -5'
22579 3' -54.6 NC_005091.1 + 56789 0.67 0.670462
Target:  5'- uUGAucGCGgGCAacGCGAUGGCGUGg -3'
miRNA:   3'- gACUuaCGCgCGUccUGCUAUCGCGC- -5'
22579 3' -54.6 NC_005091.1 + 18298 0.67 0.670462
Target:  5'- --cGAUGCGCGU--GGCGAU-GCGCGa -3'
miRNA:   3'- gacUUACGCGCGucCUGCUAuCGCGC- -5'
22579 3' -54.6 NC_005091.1 + 51590 0.69 0.593278
Target:  5'- gUGAcggGCGCGCAGaagcGCGGcacgGGCGCGa -3'
miRNA:   3'- gACUua-CGCGCGUCc---UGCUa---UCGCGC- -5'
22579 3' -54.6 NC_005091.1 + 18074 0.69 0.581214
Target:  5'- cCUGAAUcuugccgGCGCGCAGGAucauguucuCGAUgccgAGCuGCGg -3'
miRNA:   3'- -GACUUA-------CGCGCGUCCU---------GCUA----UCG-CGC- -5'
22579 3' -54.6 NC_005091.1 + 23495 0.69 0.549684
Target:  5'- -----cGCGCGC-GG-CGAUGGCGCu -3'
miRNA:   3'- gacuuaCGCGCGuCCuGCUAUCGCGc -5'
22579 3' -54.6 NC_005091.1 + 12401 0.7 0.53893
Target:  5'- cCUGAAgcagcGCGUGCAgcucguGGAUGAcUGGCGCa -3'
miRNA:   3'- -GACUUa----CGCGCGU------CCUGCU-AUCGCGc -5'
22579 3' -54.6 NC_005091.1 + 26456 0.7 0.517647
Target:  5'- cCUGAAUGCcCGuCAGGACcgc-GCGCGg -3'
miRNA:   3'- -GACUUACGcGC-GUCCUGcuauCGCGC- -5'
22579 3' -54.6 NC_005091.1 + 28791 0.7 0.496707
Target:  5'- gCUGGcAUGCGCGCAGGcCcc-GGCGUGu -3'
miRNA:   3'- -GACU-UACGCGCGUCCuGcuaUCGCGC- -5'
22579 3' -54.6 NC_005091.1 + 23314 0.71 0.455044
Target:  5'- -gGAGUGCGCaauggcaGCAGGcACGGaAGCGCc -3'
miRNA:   3'- gaCUUACGCG-------CGUCC-UGCUaUCGCGc -5'
22579 3' -54.6 NC_005091.1 + 29489 0.72 0.407848
Target:  5'- -----aGCGaCGUAGGACGcUGGCGCGc -3'
miRNA:   3'- gacuuaCGC-GCGUCCUGCuAUCGCGC- -5'
22579 3' -54.6 NC_005091.1 + 49890 0.73 0.362971
Target:  5'- cCUGcGGUGCGgugccgauaUGCAGGccgACGGUAGCGCGg -3'
miRNA:   3'- -GAC-UUACGC---------GCGUCC---UGCUAUCGCGC- -5'
22579 3' -54.6 NC_005091.1 + 49064 0.75 0.263025
Target:  5'- -cGuGUGCGgGCGGGGCGAUGG-GCGu -3'
miRNA:   3'- gaCuUACGCgCGUCCUGCUAUCgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.