Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22579 | 5' | -56.7 | NC_005091.1 | + | 23101 | 0.74 | 0.185584 |
Target: 5'- cUGCUUG--GCgGCCUGCGCUGCAu-- -3' miRNA: 3'- -ACGAGCguUGgCGGACGCGACGUuaa -5' |
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22579 | 5' | -56.7 | NC_005091.1 | + | 54947 | 0.66 | 0.596858 |
Target: 5'- cGCUCGcCAAgCGCC-GCGCgGCu--- -3' miRNA: 3'- aCGAGC-GUUgGCGGaCGCGaCGuuaa -5' |
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22579 | 5' | -56.7 | NC_005091.1 | + | 49824 | 0.66 | 0.585758 |
Target: 5'- cGUUCGUGGCgGCUUGCGCguugaGCGc-- -3' miRNA: 3'- aCGAGCGUUGgCGGACGCGa----CGUuaa -5' |
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22579 | 5' | -56.7 | NC_005091.1 | + | 46355 | 0.66 | 0.575802 |
Target: 5'- aGC-CGCcgaaaaAACCGCCgaagaaacgauggucGCGCUGCAAa- -3' miRNA: 3'- aCGaGCG------UUGGCGGa--------------CGCGACGUUaa -5' |
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22579 | 5' | -56.7 | NC_005091.1 | + | 22736 | 0.67 | 0.531024 |
Target: 5'- aGCUCGUuccGCCGCCggccgucaGCGCgGCGu-- -3' miRNA: 3'- aCGAGCGu--UGGCGGa-------CGCGaCGUuaa -5' |
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22579 | 5' | -56.7 | NC_005091.1 | + | 20998 | 0.67 | 0.513883 |
Target: 5'- aGCUUGCAucagGCCGCUUGCGauugaguugucgaaUGCGGg- -3' miRNA: 3'- aCGAGCGU----UGGCGGACGCg-------------ACGUUaa -5' |
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22579 | 5' | -56.7 | NC_005091.1 | + | 39162 | 0.67 | 0.509633 |
Target: 5'- uUGCUUGCGGCCGUCgucgccucGUGUUGUGAa- -3' miRNA: 3'- -ACGAGCGUUGGCGGa-------CGCGACGUUaa -5' |
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22579 | 5' | -56.7 | NC_005091.1 | + | 53690 | 0.67 | 0.499074 |
Target: 5'- aUGCUCGCaAACCGUUucggcaUGCG-UGCGAUg -3' miRNA: 3'- -ACGAGCG-UUGGCGG------ACGCgACGUUAa -5' |
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22579 | 5' | -56.7 | NC_005091.1 | + | 51993 | 0.67 | 0.488613 |
Target: 5'- aGCUCGCGAUgGUCgGCGCUacgGCGu-- -3' miRNA: 3'- aCGAGCGUUGgCGGaCGCGA---CGUuaa -5' |
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22579 | 5' | -56.7 | NC_005091.1 | + | 1109 | 0.68 | 0.457874 |
Target: 5'- gGCUCGCGAUCGacacgcaucuCCUGCGUgGCGu-- -3' miRNA: 3'- aCGAGCGUUGGC----------GGACGCGaCGUuaa -5' |
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22579 | 5' | -56.7 | NC_005091.1 | + | 49877 | 0.68 | 0.4282 |
Target: 5'- gGCaUCGuCGGCC-CCUGCGgUGCGGUg -3' miRNA: 3'- aCG-AGC-GUUGGcGGACGCgACGUUAa -5' |
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22579 | 5' | -56.7 | NC_005091.1 | + | 26173 | 0.69 | 0.408117 |
Target: 5'- uUGCUCGaauGCCGUucgccugcugagaCUGCGCUGUGAg- -3' miRNA: 3'- -ACGAGCgu-UGGCG-------------GACGCGACGUUaa -5' |
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22579 | 5' | -56.7 | NC_005091.1 | + | 26404 | 0.7 | 0.372427 |
Target: 5'- cUGCUgCgGCAGCCgcaGCCUGCGUUGCc--- -3' miRNA: 3'- -ACGA-G-CGUUGG---CGGACGCGACGuuaa -5' |
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22579 | 5' | -56.7 | NC_005091.1 | + | 26287 | 0.7 | 0.354967 |
Target: 5'- cGUUCGCAucguucACCgcaGCCUGCGCaGCAGc- -3' miRNA: 3'- aCGAGCGU------UGG---CGGACGCGaCGUUaa -5' |
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22579 | 5' | -56.7 | NC_005091.1 | + | 53414 | 0.69 | 0.40906 |
Target: 5'- gGCUCGUAGCCGa--GCGUUGUAGa- -3' miRNA: 3'- aCGAGCGUUGGCggaCGCGACGUUaa -5' |
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22579 | 5' | -56.7 | NC_005091.1 | + | 56012 | 0.68 | 0.4282 |
Target: 5'- uUGUUucaucUGC-GCCGCCUGCGCacGCAGUUg -3' miRNA: 3'- -ACGA-----GCGuUGGCGGACGCGa-CGUUAA- -5' |
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22579 | 5' | -56.7 | NC_005091.1 | + | 55930 | 0.67 | 0.520285 |
Target: 5'- aGCUCGUgcgccaguugcuGACCGgCUGCGCcGCu--- -3' miRNA: 3'- aCGAGCG------------UUGGCgGACGCGaCGuuaa -5' |
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22579 | 5' | -56.7 | NC_005091.1 | + | 52652 | 0.67 | 0.541842 |
Target: 5'- cUGUUCGUuACCGCgUGCGUcGCGc-- -3' miRNA: 3'- -ACGAGCGuUGGCGgACGCGaCGUuaa -5' |
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22579 | 5' | -56.7 | NC_005091.1 | + | 26437 | 0.66 | 0.563686 |
Target: 5'- cGCgCGCgGGCCGCCgGgGCUGCc--- -3' miRNA: 3'- aCGaGCG-UUGGCGGaCgCGACGuuaa -5' |
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22579 | 5' | -56.7 | NC_005091.1 | + | 21306 | 1.05 | 0.001108 |
Target: 5'- cUGCUCGCAACCGCCUGCGCUGCAAUUc -3' miRNA: 3'- -ACGAGCGUUGGCGGACGCGACGUUAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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