miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2258 5' -63.1 NC_001405.1 + 2225 0.76 0.045476
Target:  5'- --uCCUGCCGCCGCCGcCGCCuggcuuccuccugcuGUUGCu -3'
miRNA:   3'- cuuGGGCGGCGGCGGCaGCGG---------------CAGCG- -5'
2258 5' -63.1 NC_001405.1 + 3779 0.7 0.13649
Target:  5'- --cUCCGCCGCCGCUucaGCCGcUGCa -3'
miRNA:   3'- cuuGGGCGGCGGCGGcagCGGCaGCG- -5'
2258 5' -63.1 NC_001405.1 + 8567 0.69 0.160241
Target:  5'- -cGCCCGCCG-CGCgGUacCGuaGUCGCg -3'
miRNA:   3'- cuUGGGCGGCgGCGgCA--GCggCAGCG- -5'
2258 5' -63.1 NC_001405.1 + 8610 0.66 0.267953
Target:  5'- gGGACCCGCCgggagaggggGCagggGCaCGUCGgCGcCGCg -3'
miRNA:   3'- -CUUGGGCGG----------CGg---CG-GCAGCgGCaGCG- -5'
2258 5' -63.1 NC_001405.1 + 8745 0.67 0.236476
Target:  5'- ---aCCGCCG-CGUCGUCGCguUCGCc -3'
miRNA:   3'- cuugGGCGGCgGCGGCAGCGgcAGCG- -5'
2258 5' -63.1 NC_001405.1 + 8972 0.68 0.192608
Target:  5'- cGACCuCGCCGCCaCCGUggagcgaGCCGgaCGCg -3'
miRNA:   3'- cUUGG-GCGGCGGcGGCAg------CGGCa-GCG- -5'
2258 5' -63.1 NC_001405.1 + 9473 0.75 0.06133
Target:  5'- --uCCCGgugCGCCGUCGUCGCCGcCGUg -3'
miRNA:   3'- cuuGGGCg--GCGGCGGCAGCGGCaGCG- -5'
2258 5' -63.1 NC_001405.1 + 9541 0.73 0.083389
Target:  5'- cGGCCgCGCCGUCaCCGagaccaugCGCCGUCGCc -3'
miRNA:   3'- cUUGG-GCGGCGGcGGCa-------GCGGCAGCG- -5'
2258 5' -63.1 NC_001405.1 + 9783 0.7 0.140211
Target:  5'- -cACCCGCUGCCGCC--CGCCacggUGCu -3'
miRNA:   3'- cuUGGGCGGCGGCGGcaGCGGca--GCG- -5'
2258 5' -63.1 NC_001405.1 + 10047 0.7 0.144024
Target:  5'- aAACuCCGCCGCCGCCGUaGCgauaGaUGCa -3'
miRNA:   3'- cUUG-GGCGGCGGCGGCAgCGg---CaGCG- -5'
2258 5' -63.1 NC_001405.1 + 10669 0.66 0.257527
Target:  5'- cGGAUCCgGCCGuCCGCCGUgauccaugcgguuacCGCC--CGCg -3'
miRNA:   3'- -CUUGGG-CGGC-GGCGGCA---------------GCGGcaGCG- -5'
2258 5' -63.1 NC_001405.1 + 11233 0.69 0.159816
Target:  5'- cGGGCCCGgCGCCGCggggguuCGUaaucaccaucUGCCGcCGCg -3'
miRNA:   3'- -CUUGGGCgGCGGCG-------GCA----------GCGGCaGCG- -5'
2258 5' -63.1 NC_001405.1 + 11353 0.68 0.182816
Target:  5'- --uUCUGCCGCgGCaCGUaCGCC-UCGCg -3'
miRNA:   3'- cuuGGGCGGCGgCG-GCA-GCGGcAGCG- -5'
2258 5' -63.1 NC_001405.1 + 12261 0.7 0.147932
Target:  5'- --uCCaCGCCGCCGaCGUUGCCagcgCGCg -3'
miRNA:   3'- cuuGG-GCGGCGGCgGCAGCGGca--GCG- -5'
2258 5' -63.1 NC_001405.1 + 12366 0.7 0.144024
Target:  5'- -cGCCCGCa-CCGCCGgguCCGUUGCg -3'
miRNA:   3'- cuUGGGCGgcGGCGGCagcGGCAGCG- -5'
2258 5' -63.1 NC_001405.1 + 13649 0.66 0.254973
Target:  5'- cAGCgCCGCCuCUGCCugcucgCGCUGUUGCa -3'
miRNA:   3'- cUUG-GGCGGcGGCGGca----GCGGCAGCG- -5'
2258 5' -63.1 NC_001405.1 + 13903 0.66 0.267953
Target:  5'- -cGCCCGCCcacCCGUCGUCaaaggcacGaCCGUCaGCg -3'
miRNA:   3'- cuUGGGCGGc--GGCGGCAG--------C-GGCAG-CG- -5'
2258 5' -63.1 NC_001405.1 + 14261 0.79 0.030189
Target:  5'- gGAACCCagcGCCGCCGCCacuggCGCCG-CGCu -3'
miRNA:   3'- -CUUGGG---CGGCGGCGGca---GCGGCaGCG- -5'
2258 5' -63.1 NC_001405.1 + 15123 0.71 0.112893
Target:  5'- --uCCgCGCCGCUGCCacuguuGUUGCCGcCGCc -3'
miRNA:   3'- cuuGG-GCGGCGGCGG------CAGCGGCaGCG- -5'
2258 5' -63.1 NC_001405.1 + 16262 0.67 0.236476
Target:  5'- aGGgCCGCCGCCGCgCGUugggcggcagUGCCGggUCGg -3'
miRNA:   3'- cUUgGGCGGCGGCG-GCA----------GCGGC--AGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.