miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22580 3' -55.5 NC_005091.1 + 9371 0.66 0.71765
Target:  5'- -cACGGCcagccGGUCggcgGCCAGCGGCg -3'
miRNA:   3'- caUGCUGuaguaCCAG----CGGUCGCCGa -5'
22580 3' -55.5 NC_005091.1 + 30790 0.66 0.6852
Target:  5'- -gGCGAacCGUCGUccaGUCGCgAGCGGUUg -3'
miRNA:   3'- caUGCU--GUAGUAc--CAGCGgUCGCCGA- -5'
22580 3' -55.5 NC_005091.1 + 43079 0.66 0.6852
Target:  5'- cUGCGACAggagcCAaGGUCGCCuugccCGGCg -3'
miRNA:   3'- cAUGCUGUa----GUaCCAGCGGuc---GCCGa -5'
22580 3' -55.5 NC_005091.1 + 8946 0.67 0.652289
Target:  5'- cGUACGACGuUCA---UCGCCAGCGcaGCa -3'
miRNA:   3'- -CAUGCUGU-AGUaccAGCGGUCGC--CGa -5'
22580 3' -55.5 NC_005091.1 + 34778 0.67 0.652289
Target:  5'- -cGCGACAgcaUCGUGGgCGCgCAGUaccGGCUc -3'
miRNA:   3'- caUGCUGU---AGUACCaGCG-GUCG---CCGA- -5'
22580 3' -55.5 NC_005091.1 + 32666 0.67 0.641268
Target:  5'- cGU-CGACcUUGUGGUCGCCGGCa--- -3'
miRNA:   3'- -CAuGCUGuAGUACCAGCGGUCGccga -5'
22580 3' -55.5 NC_005091.1 + 16356 0.67 0.641268
Target:  5'- -aGCGACGUggaaCGUGcucggcgcguucGUCGCgAGCGGCg -3'
miRNA:   3'- caUGCUGUA----GUAC------------CAGCGgUCGCCGa -5'
22580 3' -55.5 NC_005091.1 + 6614 0.67 0.630238
Target:  5'- -cGCGGCGUCcgGGcUGCCGGCGu-- -3'
miRNA:   3'- caUGCUGUAGuaCCaGCGGUCGCcga -5'
22580 3' -55.5 NC_005091.1 + 9283 0.68 0.597196
Target:  5'- -cGCGAU-UCG-GGUCGCCGGCuGCa -3'
miRNA:   3'- caUGCUGuAGUaCCAGCGGUCGcCGa -5'
22580 3' -55.5 NC_005091.1 + 19664 0.68 0.582948
Target:  5'- cGUGUGGCucgugcUCAUGGUCGCgucguacuuucuguCGGCGGCg -3'
miRNA:   3'- -CAUGCUGu-----AGUACCAGCG--------------GUCGCCGa -5'
22580 3' -55.5 NC_005091.1 + 11866 0.68 0.564422
Target:  5'- uUGCGGCAUgAacggaUGGUCGCUgaaauccgugaAGCGGUUg -3'
miRNA:   3'- cAUGCUGUAgU-----ACCAGCGG-----------UCGCCGA- -5'
22580 3' -55.5 NC_005091.1 + 3479 0.69 0.521523
Target:  5'- -gGCGACAUCGaccagaUGGUCGUCucguuCGGCUc -3'
miRNA:   3'- caUGCUGUAGU------ACCAGCGGuc---GCCGA- -5'
22580 3' -55.5 NC_005091.1 + 25917 0.69 0.490198
Target:  5'- -aACGACuUUcgGGUCGuucguuCCAGCGGCc -3'
miRNA:   3'- caUGCUGuAGuaCCAGC------GGUCGCCGa -5'
22580 3' -55.5 NC_005091.1 + 21638 1.08 0.001036
Target:  5'- cGUACGACAUCAUGGUCGCCAGCGGCUa -3'
miRNA:   3'- -CAUGCUGUAGUACCAGCGGUCGCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.