miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22580 5' -59.9 NC_005091.1 + 381 0.71 0.232863
Target:  5'- --cGCCGucgugaAGGCGGCcaaGCGGCggggAGAGCGCg -3'
miRNA:   3'- guuCGGC------UCCGCUG---CGCCG----UCUCGUG- -5'
22580 5' -59.9 NC_005091.1 + 1265 0.66 0.470795
Target:  5'- aAGGCUGGGGCGAauacCGGCAG-GUg- -3'
miRNA:   3'- gUUCGGCUCCGCUgc--GCCGUCuCGug -5'
22580 5' -59.9 NC_005091.1 + 1322 0.71 0.22699
Target:  5'- --cGCCG-GGUGACG-GGCAGcGCACc -3'
miRNA:   3'- guuCGGCuCCGCUGCgCCGUCuCGUG- -5'
22580 5' -59.9 NC_005091.1 + 4053 0.67 0.423952
Target:  5'- cCAAGCCGgauucAGGCGGggcguuucucaccauCGUGGCGGccgcuucgagagcaAGCGCg -3'
miRNA:   3'- -GUUCGGC-----UCCGCU---------------GCGCCGUC--------------UCGUG- -5'
22580 5' -59.9 NC_005091.1 + 6166 0.7 0.270819
Target:  5'- aCGAGCCGAaGCGGCGCGaCAGucGGaCGCg -3'
miRNA:   3'- -GUUCGGCUcCGCUGCGCcGUC--UC-GUG- -5'
22580 5' -59.9 NC_005091.1 + 7221 0.72 0.204743
Target:  5'- -uGGCCGGGGCGuccuCGgcCGGCAGAuggcgGCGCg -3'
miRNA:   3'- guUCGGCUCCGCu---GC--GCCGUCU-----CGUG- -5'
22580 5' -59.9 NC_005091.1 + 7471 0.67 0.395797
Target:  5'- gCAGGCCGAGaaGACGa---AGAGCACg -3'
miRNA:   3'- -GUUCGGCUCcgCUGCgccgUCUCGUG- -5'
22580 5' -59.9 NC_005091.1 + 7834 0.66 0.441791
Target:  5'- aCAAGCCGAugaaGGCGAUGaccucgaagcaGGCccauGAGUACc -3'
miRNA:   3'- -GUUCGGCU----CCGCUGCg----------CCGu---CUCGUG- -5'
22580 5' -59.9 NC_005091.1 + 9365 0.71 0.232863
Target:  5'- -cAGCCGGucGGCGGCcaGCGGC-GAGCAg -3'
miRNA:   3'- guUCGGCU--CCGCUG--CGCCGuCUCGUg -5'
22580 5' -59.9 NC_005091.1 + 11477 0.66 0.441791
Target:  5'- gCAGGCCGAagcgcaGcGUGACGCGGCcGA-CGCc -3'
miRNA:   3'- -GUUCGGCU------C-CGCUGCGCCGuCUcGUG- -5'
22580 5' -59.9 NC_005091.1 + 12096 0.67 0.403847
Target:  5'- gCGAGCCGGGccugcuugaugauGCGGaaCGGCAcggcGAGCACg -3'
miRNA:   3'- -GUUCGGCUC-------------CGCUgcGCCGU----CUCGUG- -5'
22580 5' -59.9 NC_005091.1 + 13080 0.7 0.251251
Target:  5'- aCGAGCCGuGGCug-GCGGCAG-GCAa -3'
miRNA:   3'- -GUUCGGCuCCGcugCGCCGUCuCGUg -5'
22580 5' -59.9 NC_005091.1 + 21601 1.09 0.000322
Target:  5'- cCAAGCCGAGGCGACGCGGCAGAGCACg -3'
miRNA:   3'- -GUUCGGCUCCGCUGCGCCGUCUCGUG- -5'
22580 5' -59.9 NC_005091.1 + 23379 0.66 0.477702
Target:  5'- -cAGCCGGGGCagccGACGCaGCGccgccgaacagaccGAGCAg -3'
miRNA:   3'- guUCGGCUCCG----CUGCGcCGU--------------CUCGUg -5'
22580 5' -59.9 NC_005091.1 + 26119 0.68 0.336039
Target:  5'- gCGAGCUGAucgcgcucgccacGGCGuACGuCGGCgugcAGGGCGCg -3'
miRNA:   3'- -GUUCGGCU-------------CCGC-UGC-GCCG----UCUCGUG- -5'
22580 5' -59.9 NC_005091.1 + 26426 0.7 0.256996
Target:  5'- --cGCCGGGGCuGCcaucguaGCGGCcGGGCGCg -3'
miRNA:   3'- guuCGGCUCCGcUG-------CGCCGuCUCGUG- -5'
22580 5' -59.9 NC_005091.1 + 26647 0.67 0.3861
Target:  5'- -cGGUCGAucgagucGGCGGCcCGGCGuuGAGCGCa -3'
miRNA:   3'- guUCGGCU-------CCGCUGcGCCGU--CUCGUG- -5'
22580 5' -59.9 NC_005091.1 + 26846 0.68 0.369725
Target:  5'- gCGAGCCGGuGCGGCGUcGCAG-GCGu -3'
miRNA:   3'- -GUUCGGCUcCGCUGCGcCGUCuCGUg -5'
22580 5' -59.9 NC_005091.1 + 30131 0.7 0.264163
Target:  5'- aCAGGcCCGAGGcCGACGCuuucgcGCGGGGCu- -3'
miRNA:   3'- -GUUC-GGCUCC-GCUGCGc-----CGUCUCGug -5'
22580 5' -59.9 NC_005091.1 + 30212 0.68 0.332087
Target:  5'- -cGGCCGGGGCGucuucgaccucgacaACGUGGCGuuGCAg -3'
miRNA:   3'- guUCGGCUCCGC---------------UGCGCCGUcuCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.