miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22580 5' -59.9 NC_005091.1 + 26647 0.67 0.3861
Target:  5'- -cGGUCGAucgagucGGCGGCcCGGCGuuGAGCGCa -3'
miRNA:   3'- guUCGGCU-------CCGCUGcGCCGU--CUCGUG- -5'
22580 5' -59.9 NC_005091.1 + 26846 0.68 0.369725
Target:  5'- gCGAGCCGGuGCGGCGUcGCAG-GCGu -3'
miRNA:   3'- -GUUCGGCUcCGCUGCGcCGUCuCGUg -5'
22580 5' -59.9 NC_005091.1 + 44831 0.68 0.369725
Target:  5'- -cGGCCGgcaaGGGCGGCGgcaaGGCAGcaacgaagccgaAGCACu -3'
miRNA:   3'- guUCGGC----UCCGCUGCg---CCGUC------------UCGUG- -5'
22580 5' -59.9 NC_005091.1 + 26119 0.68 0.336039
Target:  5'- gCGAGCUGAucgcgcucgccacGGCGuACGuCGGCgugcAGGGCGCg -3'
miRNA:   3'- -GUUCGGCU-------------CCGC-UGC-GCCG----UCUCGUG- -5'
22580 5' -59.9 NC_005091.1 + 30212 0.68 0.332087
Target:  5'- -cGGCCGGGGCGucuucgaccucgacaACGUGGCGuuGCAg -3'
miRNA:   3'- guUCGGCUCCGC---------------UGCGCCGUcuCGUg -5'
22580 5' -59.9 NC_005091.1 + 55028 0.68 0.32895
Target:  5'- -cAGCCGc-GCGGCGCuuGGC-GAGCGCg -3'
miRNA:   3'- guUCGGCucCGCUGCG--CCGuCUCGUG- -5'
22580 5' -59.9 NC_005091.1 + 31753 0.68 0.32895
Target:  5'- gCGAGCCguccGAGGCGGCcggguuccaCGGCAcGAGCAg -3'
miRNA:   3'- -GUUCGG----CUCCGCUGc--------GCCGU-CUCGUg -5'
22580 5' -59.9 NC_005091.1 + 31786 0.69 0.321205
Target:  5'- -cAGCCGaAGGCGGC-CGGCGcGGCuACg -3'
miRNA:   3'- guUCGGC-UCCGCUGcGCCGUcUCG-UG- -5'
22580 5' -59.9 NC_005091.1 + 6166 0.7 0.270819
Target:  5'- aCGAGCCGAaGCGGCGCGaCAGucGGaCGCg -3'
miRNA:   3'- -GUUCGGCUcCGCUGCGCcGUC--UC-GUG- -5'
22580 5' -59.9 NC_005091.1 + 30610 0.7 0.264163
Target:  5'- --cGuCCGuGGCGAUGCucaugacGCAGAGCGCg -3'
miRNA:   3'- guuC-GGCuCCGCUGCGc------CGUCUCGUG- -5'
22580 5' -59.9 NC_005091.1 + 30131 0.7 0.264163
Target:  5'- aCAGGcCCGAGGcCGACGCuuucgcGCGGGGCu- -3'
miRNA:   3'- -GUUC-GGCUCC-GCUGCGc-----CGUCUCGug -5'
22580 5' -59.9 NC_005091.1 + 33832 0.7 0.257641
Target:  5'- cCAAGCCGGcaucGCGAugaCGCGGCgcuuccucgaAGGGCGCa -3'
miRNA:   3'- -GUUCGGCUc---CGCU---GCGCCG----------UCUCGUG- -5'
22580 5' -59.9 NC_005091.1 + 26426 0.7 0.256996
Target:  5'- --cGCCGGGGCuGCcaucguaGCGGCcGGGCGCg -3'
miRNA:   3'- guuCGGCUCCGcUG-------CGCCGuCUCGUG- -5'
22580 5' -59.9 NC_005091.1 + 47033 0.7 0.251251
Target:  5'- -cGGCCGAauugGGCGAuCGUGuuGCAGGGUACg -3'
miRNA:   3'- guUCGGCU----CCGCU-GCGC--CGUCUCGUG- -5'
22580 5' -59.9 NC_005091.1 + 52339 0.7 0.251251
Target:  5'- --cGuuGAGGCGACG-GGC-GAGCAg -3'
miRNA:   3'- guuCggCUCCGCUGCgCCGuCUCGUg -5'
22580 5' -59.9 NC_005091.1 + 13080 0.7 0.251251
Target:  5'- aCGAGCCGuGGCug-GCGGCAG-GCAa -3'
miRNA:   3'- -GUUCGGCuCCGcugCGCCGUCuCGUg -5'
22580 5' -59.9 NC_005091.1 + 9365 0.71 0.232863
Target:  5'- -cAGCCGGucGGCGGCcaGCGGC-GAGCAg -3'
miRNA:   3'- guUCGGCU--CCGCUG--CGCCGuCUCGUg -5'
22580 5' -59.9 NC_005091.1 + 381 0.71 0.232863
Target:  5'- --cGCCGucgugaAGGCGGCcaaGCGGCggggAGAGCGCg -3'
miRNA:   3'- guuCGGC------UCCGCUG---CGCCG----UCUCGUG- -5'
22580 5' -59.9 NC_005091.1 + 57775 0.71 0.232863
Target:  5'- --cGCCGucgugaAGGCGGCcaaGCGGCggggAGAGCGCg -3'
miRNA:   3'- guuCGGC------UCCGCUG---CGCCG----UCUCGUG- -5'
22580 5' -59.9 NC_005091.1 + 1322 0.71 0.22699
Target:  5'- --cGCCG-GGUGACG-GGCAGcGCACc -3'
miRNA:   3'- guuCGGCuCCGCUGCgCCGUCuCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.