Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22581 | 5' | -50.7 | NC_005091.1 | + | 21886 | 1.07 | 0.00394 |
Target: 5'- aGAGAUCAACCACAUGACCGACACGAAg -3' miRNA: 3'- -CUCUAGUUGGUGUACUGGCUGUGCUU- -5' |
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22581 | 5' | -50.7 | NC_005091.1 | + | 36851 | 0.76 | 0.377822 |
Target: 5'- -cGAUCGGCCGCGuaugccUGACCGACuACGAc -3' miRNA: 3'- cuCUAGUUGGUGU------ACUGGCUG-UGCUu -5' |
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22581 | 5' | -50.7 | NC_005091.1 | + | 28140 | 0.75 | 0.435531 |
Target: 5'- cGGAUgCAGCCgACAUcACCGACACGAAg -3' miRNA: 3'- cUCUA-GUUGG-UGUAcUGGCUGUGCUU- -5' |
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22581 | 5' | -50.7 | NC_005091.1 | + | 11508 | 0.73 | 0.541808 |
Target: 5'- --cGUCGGCCgACGUGGCCGcCGCGAAa -3' miRNA: 3'- cucUAGUUGG-UGUACUGGCuGUGCUU- -5' |
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22581 | 5' | -50.7 | NC_005091.1 | + | 8025 | 0.71 | 0.655325 |
Target: 5'- cGAGGUCGGCCuGCAUuaccugucguucGACCGAC-CGGAg -3' miRNA: 3'- -CUCUAGUUGG-UGUA------------CUGGCUGuGCUU- -5' |
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22581 | 5' | -50.7 | NC_005091.1 | + | 24643 | 0.71 | 0.678097 |
Target: 5'- -cGAUCGacACCGC-UGACCGAUACGu- -3' miRNA: 3'- cuCUAGU--UGGUGuACUGGCUGUGCuu -5' |
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22581 | 5' | -50.7 | NC_005091.1 | + | 17678 | 0.71 | 0.70068 |
Target: 5'- -uGGUCAGCUACGacAUCGGCACGAAg -3' miRNA: 3'- cuCUAGUUGGUGUacUGGCUGUGCUU- -5' |
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22581 | 5' | -50.7 | NC_005091.1 | + | 31213 | 0.7 | 0.733983 |
Target: 5'- -uGAUCGGCUGCuc-GCCGGCACGAc -3' miRNA: 3'- cuCUAGUUGGUGuacUGGCUGUGCUu -5' |
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22581 | 5' | -50.7 | NC_005091.1 | + | 1045 | 0.7 | 0.733983 |
Target: 5'- gGAGAUCAGCgCGgGUu-CCGGCACGAc -3' miRNA: 3'- -CUCUAGUUG-GUgUAcuGGCUGUGCUu -5' |
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22581 | 5' | -50.7 | NC_005091.1 | + | 50375 | 0.7 | 0.755654 |
Target: 5'- -uGAUCGGCCGCGagccgacgaUGGCUGAgACGAu -3' miRNA: 3'- cuCUAGUUGGUGU---------ACUGGCUgUGCUu -5' |
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22581 | 5' | -50.7 | NC_005091.1 | + | 23990 | 0.7 | 0.755654 |
Target: 5'- ---uUCAACCAacagAUGACCGAgACGAAc -3' miRNA: 3'- cucuAGUUGGUg---UACUGGCUgUGCUU- -5' |
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22581 | 5' | -50.7 | NC_005091.1 | + | 34837 | 0.69 | 0.766291 |
Target: 5'- -cGcgCGGCCgggACAUGGCCGACaACGAc -3' miRNA: 3'- cuCuaGUUGG---UGUACUGGCUG-UGCUu -5' |
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22581 | 5' | -50.7 | NC_005091.1 | + | 22602 | 0.69 | 0.807226 |
Target: 5'- -cGAUCAggGCCucgugcagGCAUGGCCGaaagGCACGAAg -3' miRNA: 3'- cuCUAGU--UGG--------UGUACUGGC----UGUGCUU- -5' |
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22581 | 5' | -50.7 | NC_005091.1 | + | 2033 | 0.68 | 0.816993 |
Target: 5'- -uGGUgAGCCGCAgggGACUGGCgACGAGa -3' miRNA: 3'- cuCUAgUUGGUGUa--CUGGCUG-UGCUU- -5' |
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22581 | 5' | -50.7 | NC_005091.1 | + | 16118 | 0.68 | 0.844095 |
Target: 5'- cGAGGcCAGCCGCAUGAgaugcacCCGAUcCGAc -3' miRNA: 3'- -CUCUaGUUGGUGUACU-------GGCUGuGCUu -5' |
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22581 | 5' | -50.7 | NC_005091.1 | + | 18001 | 0.68 | 0.844995 |
Target: 5'- --cGUCuACCGCAcGACCGAgGCGAc -3' miRNA: 3'- cucUAGuUGGUGUaCUGGCUgUGCUu -5' |
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22581 | 5' | -50.7 | NC_005091.1 | + | 30291 | 0.68 | 0.853859 |
Target: 5'- cGAGGUCGAagaCGCcccGGCCGGCgACGAAg -3' miRNA: 3'- -CUCUAGUUg--GUGua-CUGGCUG-UGCUU- -5' |
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22581 | 5' | -50.7 | NC_005091.1 | + | 11431 | 0.68 | 0.853859 |
Target: 5'- -cGG-CGGCCACGUcGGCCGACGCu-- -3' miRNA: 3'- cuCUaGUUGGUGUA-CUGGCUGUGcuu -5' |
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22581 | 5' | -50.7 | NC_005091.1 | + | 27984 | 0.67 | 0.862472 |
Target: 5'- -uGAUCuGAUCGCc-GGCCGACACGAc -3' miRNA: 3'- cuCUAG-UUGGUGuaCUGGCUGUGCUu -5' |
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22581 | 5' | -50.7 | NC_005091.1 | + | 52981 | 0.67 | 0.870826 |
Target: 5'- -cGAUCAGCgAaccccgcacCAUGACCGGCGCa-- -3' miRNA: 3'- cuCUAGUUGgU---------GUACUGGCUGUGcuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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