miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22582 3' -51.8 NC_005091.1 + 57531 0.69 0.737987
Target:  5'- cGAAUGGACGcccgGCCCGGAuucGCCGa- -3'
miRNA:   3'- -UUUGCUUGCuaa-UGGGCCUu--CGGCgu -5'
22582 3' -51.8 NC_005091.1 + 56691 0.66 0.895663
Target:  5'- ---gGggUGAUgugGCaUCGGAGGCCGUg -3'
miRNA:   3'- uuugCuuGCUAa--UG-GGCCUUCGGCGu -5'
22582 3' -51.8 NC_005091.1 + 52597 0.67 0.832829
Target:  5'- cGGACGAagcAUGAgaacaGCCCGGAaucccacaagccgacAGCCGCc -3'
miRNA:   3'- -UUUGCU---UGCUaa---UGGGCCU---------------UCGGCGu -5'
22582 3' -51.8 NC_005091.1 + 50720 0.67 0.810121
Target:  5'- cGAGCgGAACGAcgaaCCGGccGCCGCGu -3'
miRNA:   3'- -UUUG-CUUGCUaaugGGCCuuCGGCGU- -5'
22582 3' -51.8 NC_005091.1 + 40696 0.69 0.716177
Target:  5'- cGGCGu-CGAgUACCCGGAAGUaacuuCGCAg -3'
miRNA:   3'- uUUGCuuGCUaAUGGGCCUUCG-----GCGU- -5'
22582 3' -51.8 NC_005091.1 + 34069 0.67 0.829129
Target:  5'- --uCGGGCGGcaGCUCGGAcucgauagcGGCCGCGu -3'
miRNA:   3'- uuuGCUUGCUaaUGGGCCU---------UCGGCGU- -5'
22582 3' -51.8 NC_005091.1 + 30304 0.69 0.716177
Target:  5'- --uCGAACGGcUUGCCCGGu-GCgGCGu -3'
miRNA:   3'- uuuGCUUGCU-AAUGGGCCuuCGgCGU- -5'
22582 3' -51.8 NC_005091.1 + 25997 0.66 0.880591
Target:  5'- gGAACGAACGA---CCCGaAAGUCGUu -3'
miRNA:   3'- -UUUGCUUGCUaauGGGCcUUCGGCGu -5'
22582 3' -51.8 NC_005091.1 + 22819 0.66 0.872646
Target:  5'- cGGCGcGGCGA-UAUCCGGAGcgaacGCCGCu -3'
miRNA:   3'- uUUGC-UUGCUaAUGGGCCUU-----CGGCGu -5'
22582 3' -51.8 NC_005091.1 + 22466 1.07 0.003209
Target:  5'- gAAACGAACGAUUACCCGGAAGCCGCAu -3'
miRNA:   3'- -UUUGCUUGCUAAUGGGCCUUCGGCGU- -5'
22582 3' -51.8 NC_005091.1 + 22338 0.69 0.705133
Target:  5'- cGGGCGAagACGAaacaCCGGAuAGCCGCGa -3'
miRNA:   3'- -UUUGCU--UGCUaaugGGCCU-UCGGCGU- -5'
22582 3' -51.8 NC_005091.1 + 20922 0.69 0.727132
Target:  5'- aAGGCGGAC-AUUACCCGGcAGGCgaCGUAa -3'
miRNA:   3'- -UUUGCUUGcUAAUGGGCC-UUCG--GCGU- -5'
22582 3' -51.8 NC_005091.1 + 20396 0.66 0.895663
Target:  5'- cGAGCagGAGCGGUcGCCCGuuGAAGuuGCu -3'
miRNA:   3'- -UUUG--CUUGCUAaUGGGC--CUUCggCGu -5'
22582 3' -51.8 NC_005091.1 + 17208 0.73 0.504294
Target:  5'- --cCGAuACGuacaccuuCCCGGAAGCCGCAg -3'
miRNA:   3'- uuuGCU-UGCuaau----GGGCCUUCGGCGU- -5'
22582 3' -51.8 NC_005091.1 + 15036 0.69 0.706241
Target:  5'- cAGCG-ACGA-UACCCGGAucggggacgagacccGCCGCAu -3'
miRNA:   3'- uUUGCuUGCUaAUGGGCCUu--------------CGGCGU- -5'
22582 3' -51.8 NC_005091.1 + 14917 0.69 0.706241
Target:  5'- cAGCG-ACGA-UACCCGGAucggggacgagacccGCCGCAu -3'
miRNA:   3'- uUUGCuUGCUaAUGGGCCUu--------------CGGCGU- -5'
22582 3' -51.8 NC_005091.1 + 14797 0.69 0.706241
Target:  5'- cAGCG-ACGA-UACCCGGAucggggacgagacccGCCGCAu -3'
miRNA:   3'- uUUGCuUGCUaAUGGGCCUu--------------CGGCGU- -5'
22582 3' -51.8 NC_005091.1 + 14732 0.66 0.864438
Target:  5'- -uGCGAGCGccguagcACCCGGA-GUCGUAg -3'
miRNA:   3'- uuUGCUUGCuaa----UGGGCCUuCGGCGU- -5'
22582 3' -51.8 NC_005091.1 + 14102 0.66 0.894936
Target:  5'- -cACGaAGCGGUUccggccgguaguaGCCgGGAGGUCGCc -3'
miRNA:   3'- uuUGC-UUGCUAA-------------UGGgCCUUCGGCGu -5'
22582 3' -51.8 NC_005091.1 + 11876 0.66 0.885228
Target:  5'- cGGCGAGCGGccgaUACCaacagaugcugaaGGAcuGGCCGCAc -3'
miRNA:   3'- uUUGCUUGCUa---AUGGg------------CCU--UCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.