miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22583 5' -56.5 NC_005091.1 + 16442 0.68 0.536462
Target:  5'- aCAGcGucGCCAUGCUcgacGCCGGgauuuggaccucggcCCAGCCg -3'
miRNA:   3'- -GUC-CuuCGGUACGAc---UGGCU---------------GGUCGG- -5'
22583 5' -56.5 NC_005091.1 + 56590 0.68 0.521692
Target:  5'- aCGGGAuGCgAU--UGACCGGCaCGGCCu -3'
miRNA:   3'- -GUCCUuCGgUAcgACUGGCUG-GUCGG- -5'
22583 5' -56.5 NC_005091.1 + 26521 0.68 0.500874
Target:  5'- uCAGGcuGGCCGUGCgGGCauuGGCC-GCCu -3'
miRNA:   3'- -GUCCu-UCGGUACGaCUGg--CUGGuCGG- -5'
22583 5' -56.5 NC_005091.1 + 48677 0.68 0.500874
Target:  5'- aCAGGcaugccGUCAUGCgUGcGCaCGGCCGGCCa -3'
miRNA:   3'- -GUCCuu----CGGUACG-AC-UG-GCUGGUCGG- -5'
22583 5' -56.5 NC_005091.1 + 32418 0.69 0.480431
Target:  5'- --cGAAcGCCGUGCUGcuaucaagGCCGACCGcgagcGCCa -3'
miRNA:   3'- gucCUU-CGGUACGAC--------UGGCUGGU-----CGG- -5'
22583 5' -56.5 NC_005091.1 + 55078 0.69 0.480431
Target:  5'- aCGGGAuaCCG-GCgGGCCGcCCGGCCg -3'
miRNA:   3'- -GUCCUucGGUaCGaCUGGCuGGUCGG- -5'
22583 5' -56.5 NC_005091.1 + 9239 0.69 0.470363
Target:  5'- -cGGugcGGCCcUGCgaaGGgCGACCGGCCg -3'
miRNA:   3'- guCCu--UCGGuACGa--CUgGCUGGUCGG- -5'
22583 5' -56.5 NC_005091.1 + 24796 0.69 0.440827
Target:  5'- gAGGAAuuccGCCGUGCUGcGCaGGCC-GCCg -3'
miRNA:   3'- gUCCUU----CGGUACGAC-UGgCUGGuCGG- -5'
22583 5' -56.5 NC_005091.1 + 55525 0.69 0.440827
Target:  5'- gAGGAcGCCcgGCUGACggCGGCCGcgacGCUa -3'
miRNA:   3'- gUCCUuCGGuaCGACUG--GCUGGU----CGG- -5'
22583 5' -56.5 NC_005091.1 + 10412 0.7 0.431217
Target:  5'- -cGGAAGaCAgggGCUGACCGugAgCGGCCg -3'
miRNA:   3'- guCCUUCgGUa--CGACUGGC--UgGUCGG- -5'
22583 5' -56.5 NC_005091.1 + 55941 0.7 0.391342
Target:  5'- uCAGGccgugcagcucgugcGCCAguUGCUGACCGGCUGcGCCg -3'
miRNA:   3'- -GUCCuu-------------CGGU--ACGACUGGCUGGU-CGG- -5'
22583 5' -56.5 NC_005091.1 + 16016 0.72 0.310673
Target:  5'- uCAGGccgacAAGCguCGUGCUGccGCCGGCCGGCg -3'
miRNA:   3'- -GUCC-----UUCG--GUACGAC--UGGCUGGUCGg -5'
22583 5' -56.5 NC_005091.1 + 33595 0.73 0.274298
Target:  5'- gCAGGcAGCCGUGaugcgGAUCGauGCCGGCCu -3'
miRNA:   3'- -GUCCuUCGGUACga---CUGGC--UGGUCGG- -5'
22583 5' -56.5 NC_005091.1 + 45664 0.74 0.247719
Target:  5'- uCAGGAAGCCGac---GCCGGCCAGCUu -3'
miRNA:   3'- -GUCCUUCGGUacgacUGGCUGGUCGG- -5'
22583 5' -56.5 NC_005091.1 + 26609 0.74 0.241416
Target:  5'- gCAGGcGGCCaAUGCccGCaCGGCCAGCCu -3'
miRNA:   3'- -GUCCuUCGG-UACGacUG-GCUGGUCGG- -5'
22583 5' -56.5 NC_005091.1 + 22551 1.12 0.000475
Target:  5'- uCAGGAAGCCAUGCUGACCGACCAGCCg -3'
miRNA:   3'- -GUCCUUCGGUACGACUGGCUGGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.