miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22585 3' -51 NC_005091.1 + 15734 0.66 0.92321
Target:  5'- gCGAUCUGCGCGcCAUUCguaucgaUGAACCGc- -3'
miRNA:   3'- -GUUAGGCGCGUuGUAGG-------ACUUGGUcu -5'
22585 3' -51 NC_005091.1 + 55941 0.66 0.911112
Target:  5'- uCAggCCGUGCAGC-UCgUGcGCCAGu -3'
miRNA:   3'- -GUuaGGCGCGUUGuAGgACuUGGUCu -5'
22585 3' -51 NC_005091.1 + 23842 0.67 0.889876
Target:  5'- aGAUUCaGCGCAugGUCgCUGAGaugCAGAa -3'
miRNA:   3'- gUUAGG-CGCGUugUAG-GACUUg--GUCU- -5'
22585 3' -51 NC_005091.1 + 32392 0.67 0.882232
Target:  5'- ---aCCGCGagcgccaagcaGGCAUCCUGAACUgcgaAGAa -3'
miRNA:   3'- guuaGGCGCg----------UUGUAGGACUUGG----UCU- -5'
22585 3' -51 NC_005091.1 + 22172 0.67 0.882232
Target:  5'- gCAAUCCGCGCAggucgGCAUUuugCUGGcgGCCGu- -3'
miRNA:   3'- -GUUAGGCGCGU-----UGUAG---GACU--UGGUcu -5'
22585 3' -51 NC_005091.1 + 22461 0.67 0.874314
Target:  5'- -cAUCUGCGgcuggucgguCAGCAuggcuUCCUGAAUCGGAa -3'
miRNA:   3'- guUAGGCGC----------GUUGU-----AGGACUUGGUCU- -5'
22585 3' -51 NC_005091.1 + 36053 0.67 0.874314
Target:  5'- gCAAUCCGUaCGACAUCUaugucgUGGACCGc- -3'
miRNA:   3'- -GUUAGGCGcGUUGUAGG------ACUUGGUcu -5'
22585 3' -51 NC_005091.1 + 2112 0.67 0.866129
Target:  5'- gAGUCCGCGCAACuga-UGGuGCCGGu -3'
miRNA:   3'- gUUAGGCGCGUUGuaggACU-UGGUCu -5'
22585 3' -51 NC_005091.1 + 19338 0.67 0.866129
Target:  5'- ---gCUGCGCAACggCCUGAagAUCAGc -3'
miRNA:   3'- guuaGGCGCGUUGuaGGACU--UGGUCu -5'
22585 3' -51 NC_005091.1 + 34389 0.68 0.830879
Target:  5'- uCAggUCGCGCAccccgGCGaCCUGuACCAGAu -3'
miRNA:   3'- -GUuaGGCGCGU-----UGUaGGACuUGGUCU- -5'
22585 3' -51 NC_005091.1 + 13240 0.68 0.821485
Target:  5'- gCGAUCCGCGCAACGaaCUUGuuGGCCGc- -3'
miRNA:   3'- -GUUAGGCGCGUUGUa-GGAC--UUGGUcu -5'
22585 3' -51 NC_005091.1 + 21846 0.69 0.792073
Target:  5'- ---gCCGCGCgAGCGUCaUGAACgAGAc -3'
miRNA:   3'- guuaGGCGCG-UUGUAGgACUUGgUCU- -5'
22585 3' -51 NC_005091.1 + 6604 0.69 0.761064
Target:  5'- uGAUCgcuCGCGCGGCGUCCgGGcuGCCGGc -3'
miRNA:   3'- gUUAG---GCGCGUUGUAGGaCU--UGGUCu -5'
22585 3' -51 NC_005091.1 + 3219 0.71 0.684368
Target:  5'- aCAGgaugUCGUGCAccGCGUCCUGAagcucuucgaggACCGGAu -3'
miRNA:   3'- -GUUa---GGCGCGU--UGUAGGACU------------UGGUCU- -5'
22585 3' -51 NC_005091.1 + 23554 0.71 0.673099
Target:  5'- aCAGUUCGCuGC-GCAguUCCUGcGCCAGAu -3'
miRNA:   3'- -GUUAGGCG-CGuUGU--AGGACuUGGUCU- -5'
22585 3' -51 NC_005091.1 + 51555 0.72 0.605025
Target:  5'- gCGAUCCGCGCGGCAUCgCcaagUGGgcggaagcgacgACCGGGg -3'
miRNA:   3'- -GUUAGGCGCGUUGUAG-G----ACU------------UGGUCU- -5'
22585 3' -51 NC_005091.1 + 2707 0.74 0.483827
Target:  5'- aUAGUCUGCGCcguaucgaacGCAUCCgcaGAACCGGAg -3'
miRNA:   3'- -GUUAGGCGCGu---------UGUAGGa--CUUGGUCU- -5'
22585 3' -51 NC_005091.1 + 4667 0.76 0.375493
Target:  5'- --cUCCGCGCGuCGUUUUGGGCCGGGg -3'
miRNA:   3'- guuAGGCGCGUuGUAGGACUUGGUCU- -5'
22585 3' -51 NC_005091.1 + 23216 0.99 0.014246
Target:  5'- aCAAUCCGCGCAACAUCC-GAACCAGAc -3'
miRNA:   3'- -GUUAGGCGCGUUGUAGGaCUUGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.