miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22585 5' -59.7 NC_005091.1 + 25074 0.67 0.377954
Target:  5'- --cGCGGCGUucaaccgaucGGCgGCCAcggaGGCGGUCg -3'
miRNA:   3'- uuaCGUCGCGu---------CCGgCGGU----UCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 35534 0.67 0.377077
Target:  5'- --aGCGGCGUacggacaagggauGGGUCGCCAcGuCGGUCa -3'
miRNA:   3'- uuaCGUCGCG-------------UCCGGCGGUuC-GUCGG- -5'
22585 5' -59.7 NC_005091.1 + 10912 0.67 0.369244
Target:  5'- --cGCAGCGCguacGGGUCGUC--GCuGCCg -3'
miRNA:   3'- uuaCGUCGCG----UCCGGCGGuuCGuCGG- -5'
22585 5' -59.7 NC_005091.1 + 48625 0.67 0.366657
Target:  5'- --cGCGGCgacaccaacacgcaGCAGcCCGCCGcGUAGCCu -3'
miRNA:   3'- uuaCGUCG--------------CGUCcGGCGGUuCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 19244 0.67 0.359822
Target:  5'- uGUGCuGCGUgucgcugaucuucAGGCCGUUgcGCAGCa -3'
miRNA:   3'- uUACGuCGCG-------------UCCGGCGGuuCGUCGg -5'
22585 5' -59.7 NC_005091.1 + 54964 0.67 0.352239
Target:  5'- --gGCGGCGCGGGgC-CUAAG-AGCCu -3'
miRNA:   3'- uuaCGUCGCGUCCgGcGGUUCgUCGG- -5'
22585 5' -59.7 NC_005091.1 + 7056 0.68 0.343947
Target:  5'- --gGCAG-GagaAGGCCGCCAAGCGacuCCu -3'
miRNA:   3'- uuaCGUCgCg--UCCGGCGGUUCGUc--GG- -5'
22585 5' -59.7 NC_005091.1 + 55437 0.68 0.343947
Target:  5'- --aGCGuCGC-GGCCGCCGu-CAGCCg -3'
miRNA:   3'- uuaCGUcGCGuCCGGCGGUucGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 20150 0.68 0.343947
Target:  5'- uGAUGaacGCGCAGaUCGUCGGGCAGCa -3'
miRNA:   3'- -UUACgu-CGCGUCcGGCGGUUCGUCGg -5'
22585 5' -59.7 NC_005091.1 + 37269 0.68 0.335796
Target:  5'- --cGUAuCGCAGGCCGCCGccaAGUA-CCg -3'
miRNA:   3'- uuaCGUcGCGUCCGGCGGU---UCGUcGG- -5'
22585 5' -59.7 NC_005091.1 + 17334 0.68 0.335796
Target:  5'- --cGUAGCGCuGGCCGUUcAGCuucagauuGCCc -3'
miRNA:   3'- uuaCGUCGCGuCCGGCGGuUCGu-------CGG- -5'
22585 5' -59.7 NC_005091.1 + 49891 0.68 0.327788
Target:  5'- -cUGCGGUGCGGuGCCGauauGCAGgCCg -3'
miRNA:   3'- uuACGUCGCGUC-CGGCgguuCGUC-GG- -5'
22585 5' -59.7 NC_005091.1 + 56898 0.68 0.327788
Target:  5'- -uUGCcGuCGCuGGCUGCgCGGuGCAGCCa -3'
miRNA:   3'- uuACGuC-GCGuCCGGCG-GUU-CGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 14270 0.68 0.327788
Target:  5'- --cGCGGUGUc-GUCGgCGAGCGGCCa -3'
miRNA:   3'- uuaCGUCGCGucCGGCgGUUCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 381 0.68 0.319921
Target:  5'- --cGCcGuCGUgaAGGCgGCCAAGCGGCg -3'
miRNA:   3'- uuaCGuC-GCG--UCCGgCGGUUCGUCGg -5'
22585 5' -59.7 NC_005091.1 + 57775 0.68 0.319921
Target:  5'- --cGCcGuCGUgaAGGCgGCCAAGCGGCg -3'
miRNA:   3'- uuaCGuC-GCG--UCCGgCGGUUCGUCGg -5'
22585 5' -59.7 NC_005091.1 + 32940 0.68 0.319143
Target:  5'- --cGCAGCGCGGGaCGaaAAGCccaucauGGCCg -3'
miRNA:   3'- uuaCGUCGCGUCCgGCggUUCG-------UCGG- -5'
22585 5' -59.7 NC_005091.1 + 44883 0.68 0.312198
Target:  5'- --gGCGGUaCGGGCgGCggcaAGGCGGCCg -3'
miRNA:   3'- uuaCGUCGcGUCCGgCGg---UUCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 33169 0.68 0.312198
Target:  5'- cGUGUucgAGCGCGuuaucGGCCGCCGcgAGCuGCUu -3'
miRNA:   3'- uUACG---UCGCGU-----CCGGCGGU--UCGuCGG- -5'
22585 5' -59.7 NC_005091.1 + 9386 0.68 0.312198
Target:  5'- --gGCGGgaaccauuCGCAcGGCCaGCCGgucGGCGGCCa -3'
miRNA:   3'- uuaCGUC--------GCGU-CCGG-CGGU---UCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.