miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22586 3' -53.4 NC_005091.1 + 48526 0.67 0.782004
Target:  5'- aUAGCGCcgcuGCCcuuccccgaaguucUCGCgaaaaGAUUUGCGCg -3'
miRNA:   3'- -GUCGCGu---UGG--------------AGCGaag--CUAAGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 54090 0.67 0.774951
Target:  5'- -cGCGCcuUgUCGCgUUCGGU-CGCGCc -3'
miRNA:   3'- guCGCGuuGgAGCG-AAGCUAaGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 10440 0.67 0.774951
Target:  5'- -cGCGCcguCCUCGaugUCGgg-CGCGCg -3'
miRNA:   3'- guCGCGuu-GGAGCga-AGCuaaGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 38142 0.67 0.774951
Target:  5'- aGGCGCAACg-CGCaggaCGAUcucuUCGUGCg -3'
miRNA:   3'- gUCGCGUUGgaGCGaa--GCUA----AGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 3408 0.67 0.764748
Target:  5'- cCGGaaGCAACCgUGcCUUCGAcaaUCGCGCg -3'
miRNA:   3'- -GUCg-CGUUGGaGC-GAAGCUa--AGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 26079 0.67 0.754406
Target:  5'- gGGCGCGauuaACCUUGCggCGG---GCGCa -3'
miRNA:   3'- gUCGCGU----UGGAGCGaaGCUaagCGCG- -5'
22586 3' -53.4 NC_005091.1 + 26133 0.68 0.733354
Target:  5'- uCAGCGCGug--CGCggCGAgcugaUCGCGCu -3'
miRNA:   3'- -GUCGCGUuggaGCGaaGCUa----AGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 17165 0.68 0.722668
Target:  5'- gGGUGCuacACUUCGCgccgaggUCGAgagcaCGCGCa -3'
miRNA:   3'- gUCGCGu--UGGAGCGa------AGCUaa---GCGCG- -5'
22586 3' -53.4 NC_005091.1 + 52782 0.68 0.722668
Target:  5'- cCAGCGCAaaGCCgUCGCacuggcCGGcgUGCGCg -3'
miRNA:   3'- -GUCGCGU--UGG-AGCGaa----GCUaaGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 42529 0.68 0.722668
Target:  5'- -cGCgGCAACCggCGUagaugguguuUUCGAUcUCGCGCu -3'
miRNA:   3'- guCG-CGUUGGa-GCG----------AAGCUA-AGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 29597 0.68 0.722668
Target:  5'- -cGCGCAacgACCUCgaaGCUgUGAUcggCGCGCg -3'
miRNA:   3'- guCGCGU---UGGAG---CGAaGCUAa--GCGCG- -5'
22586 3' -53.4 NC_005091.1 + 47210 0.68 0.722668
Target:  5'- aAGCuGCAcgGCCacaaUCGCUUCGA--CGUGCu -3'
miRNA:   3'- gUCG-CGU--UGG----AGCGAAGCUaaGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 26045 0.68 0.722668
Target:  5'- gAGCGCGAUcagCUCGCcgCGca-CGCGCu -3'
miRNA:   3'- gUCGCGUUG---GAGCGaaGCuaaGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 51060 0.68 0.721594
Target:  5'- cCAGCGC-GCC--GCUUCGAUcaacgccUCGCGg -3'
miRNA:   3'- -GUCGCGuUGGagCGAAGCUA-------AGCGCg -5'
22586 3' -53.4 NC_005091.1 + 18146 0.68 0.71189
Target:  5'- uCGGCGCgAGCUUCGCggcccggCGAUcgaGCGUg -3'
miRNA:   3'- -GUCGCG-UUGGAGCGaa-----GCUAag-CGCG- -5'
22586 3' -53.4 NC_005091.1 + 10886 0.68 0.71189
Target:  5'- gAGUGCAaugcgcGCCUUgGCcgCGAUcguUCGCGCa -3'
miRNA:   3'- gUCGCGU------UGGAG-CGaaGCUA---AGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 34196 0.69 0.679122
Target:  5'- -cGCGCGACUgauc--CGGUUCGCGCg -3'
miRNA:   3'- guCGCGUUGGagcgaaGCUAAGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 34418 0.69 0.679122
Target:  5'- aAGCGCGGCCggcCGCagggcuacuggaUUCaggUCGCGCa -3'
miRNA:   3'- gUCGCGUUGGa--GCG------------AAGcuaAGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 12370 0.69 0.65703
Target:  5'- uGGCGCAACCUCGUgaagUUCagcUCGaCGUg -3'
miRNA:   3'- gUCGCGUUGGAGCG----AAGcuaAGC-GCG- -5'
22586 3' -53.4 NC_005091.1 + 9202 0.69 0.645944
Target:  5'- -cGUGCAGCCggCGaccCGAaUCGCGCg -3'
miRNA:   3'- guCGCGUUGGa-GCgaaGCUaAGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.