miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22586 5' -57.7 NC_005091.1 + 25040 0.68 0.454838
Target:  5'- cGAG-ACUGGUCGGCAcUgcGGCGGCc -3'
miRNA:   3'- -UUCgUGACCGGCUGUuGuuCCGCCGc -5'
22586 5' -57.7 NC_005091.1 + 31335 0.68 0.445036
Target:  5'- -uGCACguucGGCgCGACgAACGGGGCGaGCu -3'
miRNA:   3'- uuCGUGa---CCG-GCUG-UUGUUCCGC-CGc -5'
22586 5' -57.7 NC_005091.1 + 19418 0.68 0.425793
Target:  5'- cGGCACaucuucaaaGCCGGCAuguGCGAGcGCGGCGc -3'
miRNA:   3'- uUCGUGac-------CGGCUGU---UGUUC-CGCCGC- -5'
22586 5' -57.7 NC_005091.1 + 23290 0.68 0.417297
Target:  5'- cGGCACgguagucggccugaaGGCUGAUGAacAGGCGGCGa -3'
miRNA:   3'- uUCGUGa--------------CCGGCUGUUguUCCGCCGC- -5'
22586 5' -57.7 NC_005091.1 + 30284 0.68 0.41636
Target:  5'- gAAGaCGCcccGGCCGGCGACgAAGGCgaagacGGCGa -3'
miRNA:   3'- -UUC-GUGa--CCGGCUGUUG-UUCCG------CCGC- -5'
22586 5' -57.7 NC_005091.1 + 25815 0.68 0.410761
Target:  5'- -uGCcUUGGCCGACAcggcgaacuugccguACGAcGCGGCGa -3'
miRNA:   3'- uuCGuGACCGGCUGU---------------UGUUcCGCCGC- -5'
22586 5' -57.7 NC_005091.1 + 6187 0.68 0.407054
Target:  5'- uAGCGCgggGGCUugcgGGCGACGAGccgaaGCGGCGc -3'
miRNA:   3'- uUCGUGa--CCGG----CUGUUGUUC-----CGCCGC- -5'
22586 5' -57.7 NC_005091.1 + 14337 0.68 0.407054
Target:  5'- cGGUcaACgGGUCGGCGuacgacacGCAAGGCGGCu -3'
miRNA:   3'- uUCG--UGaCCGGCUGU--------UGUUCCGCCGc -5'
22586 5' -57.7 NC_005091.1 + 34419 0.69 0.388841
Target:  5'- cAAGCGC-GGCCGGCcGCAGGGCu--- -3'
miRNA:   3'- -UUCGUGaCCGGCUGuUGUUCCGccgc -5'
22586 5' -57.7 NC_005091.1 + 53645 0.69 0.371171
Target:  5'- -uGCGCUGGCaaugguGCGACGAGGUagaaGGCGc -3'
miRNA:   3'- uuCGUGACCGgc----UGUUGUUCCG----CCGC- -5'
22586 5' -57.7 NC_005091.1 + 32178 0.69 0.365978
Target:  5'- cGGCGCggacccGGCCGGCGGCAAGGgcaacgaagcugaaGGCa -3'
miRNA:   3'- uUCGUGa-----CCGGCUGUUGUUCCg-------------CCGc -5'
22586 5' -57.7 NC_005091.1 + 34829 0.7 0.329445
Target:  5'- cGGgACaUGGCCGACAACGAcGGCuucacgaacGGCGc -3'
miRNA:   3'- uUCgUG-ACCGGCUGUUGUU-CCG---------CCGC- -5'
22586 5' -57.7 NC_005091.1 + 12373 0.7 0.321527
Target:  5'- cGAGCGC-GGCC-AguGCGAcGGCGGCGa -3'
miRNA:   3'- -UUCGUGaCCGGcUguUGUU-CCGCCGC- -5'
22586 5' -57.7 NC_005091.1 + 57831 0.7 0.321527
Target:  5'- cGGCGCaGGUCGAgCAGCAAucGGCGGuCGa -3'
miRNA:   3'- uUCGUGaCCGGCU-GUUGUU--CCGCC-GC- -5'
22586 5' -57.7 NC_005091.1 + 437 0.7 0.321527
Target:  5'- cGGCGCaGGUCGAgCAGCAAucGGCGGuCGa -3'
miRNA:   3'- uUCGUGaCCGGCU-GUUGUU--CCGCC-GC- -5'
22586 5' -57.7 NC_005091.1 + 52185 0.71 0.308394
Target:  5'- gGGGCGuCccgaugacuuccaaaUGGCCGACAcggacccgguaguGCGGGGCGGCu -3'
miRNA:   3'- -UUCGU-G---------------ACCGGCUGU-------------UGUUCCGCCGc -5'
22586 5' -57.7 NC_005091.1 + 57152 0.71 0.30612
Target:  5'- -cGCccgACUGGCUGAgAugGaaugGGGCGGCGa -3'
miRNA:   3'- uuCG---UGACCGGCUgUugU----UCCGCCGC- -5'
22586 5' -57.7 NC_005091.1 + 32742 0.71 0.291285
Target:  5'- cGGCGaccacaaGGUCGACGGCAaucccuacgAGGCGGCGa -3'
miRNA:   3'- uUCGUga-----CCGGCUGUUGU---------UCCGCCGC- -5'
22586 5' -57.7 NC_005091.1 + 55905 0.71 0.277018
Target:  5'- uGGCGCagcaGGCCGACcaacuGCGugcgcAGGCGGCGc -3'
miRNA:   3'- uUCGUGa---CCGGCUGu----UGU-----UCCGCCGC- -5'
22586 5' -57.7 NC_005091.1 + 44837 0.72 0.237567
Target:  5'- --cCACggcGGCCGGCAA--GGGCGGCGg -3'
miRNA:   3'- uucGUGa--CCGGCUGUUguUCCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.