Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22587 | 3' | -54.8 | NC_005091.1 | + | 25141 | 1.04 | 0.001808 |
Target: 5'- gAACGCCGCGCUUGCGGCAAUCAACAAa -3' miRNA: 3'- -UUGCGGCGCGAACGCCGUUAGUUGUU- -5' |
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22587 | 3' | -54.8 | NC_005091.1 | + | 55591 | 0.8 | 0.100439 |
Target: 5'- cGCGCuCGUGCagGCGGCGAUCGGCGAa -3' miRNA: 3'- uUGCG-GCGCGaaCGCCGUUAGUUGUU- -5' |
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22587 | 3' | -54.8 | NC_005091.1 | + | 36496 | 0.78 | 0.138062 |
Target: 5'- aAGCGCCGUGCUgcgGCGGCcggaucgaagcgGAUCAGCGc -3' miRNA: 3'- -UUGCGGCGCGAa--CGCCG------------UUAGUUGUu -5' |
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22587 | 3' | -54.8 | NC_005091.1 | + | 21590 | 0.76 | 0.198376 |
Target: 5'- cGACGCgGCagagcacGCUUGCGGCGAUgAACGAu -3' miRNA: 3'- -UUGCGgCG-------CGAACGCCGUUAgUUGUU- -5' |
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22587 | 3' | -54.8 | NC_005091.1 | + | 22827 | 0.75 | 0.210142 |
Target: 5'- gAACGCCGCGCUgacggccgGCGGCGG--AACGAg -3' miRNA: 3'- -UUGCGGCGCGAa-------CGCCGUUagUUGUU- -5' |
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22587 | 3' | -54.8 | NC_005091.1 | + | 23308 | 0.74 | 0.247102 |
Target: 5'- cGCGCCGCGCUaccacaGCGGCAcgguaGUCGGCc- -3' miRNA: 3'- uUGCGGCGCGAa-----CGCCGU-----UAGUUGuu -5' |
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22587 | 3' | -54.8 | NC_005091.1 | + | 47052 | 0.72 | 0.312413 |
Target: 5'- aGAUGCCGCGCUcGCGGU---CAGCGGg -3' miRNA: 3'- -UUGCGGCGCGAaCGCCGuuaGUUGUU- -5' |
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22587 | 3' | -54.8 | NC_005091.1 | + | 53463 | 0.72 | 0.320428 |
Target: 5'- --aGCCGCGCccgUGCGGCAAgcggaaGACGAc -3' miRNA: 3'- uugCGGCGCGa--ACGCCGUUag----UUGUU- -5' |
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22587 | 3' | -54.8 | NC_005091.1 | + | 51026 | 0.71 | 0.380792 |
Target: 5'- uGCGCacCGCGCUUGCGGUcgcugAcgCGGCAAa -3' miRNA: 3'- uUGCG--GCGCGAACGCCG-----UuaGUUGUU- -5' |
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22587 | 3' | -54.8 | NC_005091.1 | + | 35228 | 0.7 | 0.458469 |
Target: 5'- cACGCCaGCGCg-GCGGCGAUUuucGCGAg -3' miRNA: 3'- uUGCGG-CGCGaaCGCCGUUAGu--UGUU- -5' |
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22587 | 3' | -54.8 | NC_005091.1 | + | 12154 | 0.7 | 0.458469 |
Target: 5'- gGACGaagCGCGCguacUGCGGCGggAUCAGCGc -3' miRNA: 3'- -UUGCg--GCGCGa---ACGCCGU--UAGUUGUu -5' |
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22587 | 3' | -54.8 | NC_005091.1 | + | 20038 | 0.68 | 0.52191 |
Target: 5'- -cCGCCGCGCUUGaacGUcAUCGACAu -3' miRNA: 3'- uuGCGGCGCGAACgc-CGuUAGUUGUu -5' |
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22587 | 3' | -54.8 | NC_005091.1 | + | 46275 | 0.68 | 0.554897 |
Target: 5'- cGAgGCCGCGCUcGUGGCcGUCGuACu- -3' miRNA: 3'- -UUgCGGCGCGAaCGCCGuUAGU-UGuu -5' |
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22587 | 3' | -54.8 | NC_005091.1 | + | 6680 | 0.68 | 0.554897 |
Target: 5'- gGACGCCGCGCgaGCGaucAUCGACu- -3' miRNA: 3'- -UUGCGGCGCGaaCGCcguUAGUUGuu -5' |
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22587 | 3' | -54.8 | NC_005091.1 | + | 22057 | 0.68 | 0.566034 |
Target: 5'- -cCGCUGCGCUUGaUGGUGAUCGuCGu -3' miRNA: 3'- uuGCGGCGCGAAC-GCCGUUAGUuGUu -5' |
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22587 | 3' | -54.8 | NC_005091.1 | + | 819 | 0.68 | 0.566034 |
Target: 5'- -cUGCCGCGUggguguacgGCGGCGAUCcuGCGg -3' miRNA: 3'- uuGCGGCGCGaa-------CGCCGUUAGu-UGUu -5' |
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22587 | 3' | -54.8 | NC_005091.1 | + | 51222 | 0.67 | 0.588469 |
Target: 5'- -uCGCCGCGCgucgcUGUGGgAAgCAACGAu -3' miRNA: 3'- uuGCGGCGCGa----ACGCCgUUaGUUGUU- -5' |
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22587 | 3' | -54.8 | NC_005091.1 | + | 7610 | 0.67 | 0.599749 |
Target: 5'- -cCGCCGUGCcgacCGGCGAuUCGACAGg -3' miRNA: 3'- uuGCGGCGCGaac-GCCGUU-AGUUGUU- -5' |
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22587 | 3' | -54.8 | NC_005091.1 | + | 34466 | 0.67 | 0.599749 |
Target: 5'- -uCGCCGCGCggucccacuCGGCAGUCGcCAGc -3' miRNA: 3'- uuGCGGCGCGaac------GCCGUUAGUuGUU- -5' |
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22587 | 3' | -54.8 | NC_005091.1 | + | 41262 | 0.67 | 0.599749 |
Target: 5'- -cUGCCGaacgaguuccaGCUUGCGGCGAUCuGCc- -3' miRNA: 3'- uuGCGGCg----------CGAACGCCGUUAGuUGuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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