miRNA display CGI


Results 21 - 31 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22587 3' -54.8 NC_005091.1 + 35228 0.7 0.458469
Target:  5'- cACGCCaGCGCg-GCGGCGAUUuucGCGAg -3'
miRNA:   3'- uUGCGG-CGCGaaCGCCGUUAGu--UGUU- -5'
22587 3' -54.8 NC_005091.1 + 12154 0.7 0.458469
Target:  5'- gGACGaagCGCGCguacUGCGGCGggAUCAGCGc -3'
miRNA:   3'- -UUGCg--GCGCGa---ACGCCGU--UAGUUGUu -5'
22587 3' -54.8 NC_005091.1 + 51026 0.71 0.380792
Target:  5'- uGCGCacCGCGCUUGCGGUcgcugAcgCGGCAAa -3'
miRNA:   3'- uUGCG--GCGCGAACGCCG-----UuaGUUGUU- -5'
22587 3' -54.8 NC_005091.1 + 53463 0.72 0.320428
Target:  5'- --aGCCGCGCccgUGCGGCAAgcggaaGACGAc -3'
miRNA:   3'- uugCGGCGCGa--ACGCCGUUag----UUGUU- -5'
22587 3' -54.8 NC_005091.1 + 47052 0.72 0.312413
Target:  5'- aGAUGCCGCGCUcGCGGU---CAGCGGg -3'
miRNA:   3'- -UUGCGGCGCGAaCGCCGuuaGUUGUU- -5'
22587 3' -54.8 NC_005091.1 + 23308 0.74 0.247102
Target:  5'- cGCGCCGCGCUaccacaGCGGCAcgguaGUCGGCc- -3'
miRNA:   3'- uUGCGGCGCGAa-----CGCCGU-----UAGUUGuu -5'
22587 3' -54.8 NC_005091.1 + 22827 0.75 0.210142
Target:  5'- gAACGCCGCGCUgacggccgGCGGCGG--AACGAg -3'
miRNA:   3'- -UUGCGGCGCGAa-------CGCCGUUagUUGUU- -5'
22587 3' -54.8 NC_005091.1 + 21590 0.76 0.198376
Target:  5'- cGACGCgGCagagcacGCUUGCGGCGAUgAACGAu -3'
miRNA:   3'- -UUGCGgCG-------CGAACGCCGUUAgUUGUU- -5'
22587 3' -54.8 NC_005091.1 + 36496 0.78 0.138062
Target:  5'- aAGCGCCGUGCUgcgGCGGCcggaucgaagcgGAUCAGCGc -3'
miRNA:   3'- -UUGCGGCGCGAa--CGCCG------------UUAGUUGUu -5'
22587 3' -54.8 NC_005091.1 + 55591 0.8 0.100439
Target:  5'- cGCGCuCGUGCagGCGGCGAUCGGCGAa -3'
miRNA:   3'- uUGCG-GCGCGaaCGCCGUUAGUUGUU- -5'
22587 3' -54.8 NC_005091.1 + 25141 1.04 0.001808
Target:  5'- gAACGCCGCGCUUGCGGCAAUCAACAAa -3'
miRNA:   3'- -UUGCGGCGCGAACGCCGUUAGUUGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.