miRNA display CGI


Results 41 - 54 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22589 3' -59.5 NC_005091.1 + 26123 1.11 0.000315
Target:  5'- cGCGGCGAGCUGAUCGCGCUCGCCACGg -3'
miRNA:   3'- -CGCCGCUCGACUAGCGCGAGCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 25721 0.68 0.398174
Target:  5'- cGCGGCcAGCUcggcGAUCG-GCUgccCGCCGCa -3'
miRNA:   3'- -CGCCGcUCGA----CUAGCgCGA---GCGGUGc -5'
22589 3' -59.5 NC_005091.1 + 43206 0.68 0.407052
Target:  5'- aGCGGcCGAGaaaauuAUCGCcccGCUCGUCGCGa -3'
miRNA:   3'- -CGCC-GCUCgac---UAGCG---CGAGCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 52875 0.68 0.425176
Target:  5'- cGCGuGCGGcCUGAUCGC---CGCCGCGu -3'
miRNA:   3'- -CGC-CGCUcGACUAGCGcgaGCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 42630 0.67 0.442832
Target:  5'- uCGGCGAGCgcgaGAUCGaaaacaccaucuaCGCcggUUGCCGCGu -3'
miRNA:   3'- cGCCGCUCGa---CUAGC-------------GCG---AGCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 16364 0.67 0.443773
Target:  5'- cGCGGCcaAGCgacgugGAaCGUGCUCGgCGCGu -3'
miRNA:   3'- -CGCCGc-UCGa-----CUaGCGCGAGCgGUGC- -5'
22589 3' -59.5 NC_005091.1 + 57212 0.67 0.482284
Target:  5'- gGCGGCGAgucgcggaaGCUGGcguUCGauauacagcCGCUCGgCCGCa -3'
miRNA:   3'- -CGCCGCU---------CGACU---AGC---------GCGAGC-GGUGc -5'
22589 3' -59.5 NC_005091.1 + 42429 0.67 0.482284
Target:  5'- aCGGCGAGgaa---GCGCUCGCCGa- -3'
miRNA:   3'- cGCCGCUCgacuagCGCGAGCGGUgc -5'
22589 3' -59.5 NC_005091.1 + 6571 0.66 0.502137
Target:  5'- gGCGGCaccauGCgGAU-GCGUUCGCCAUc -3'
miRNA:   3'- -CGCCGcu---CGaCUAgCGCGAGCGGUGc -5'
22589 3' -59.5 NC_005091.1 + 29855 0.66 0.512197
Target:  5'- aGUGGuCGGGUUGAgCGCGUUCcgGCCcugACGa -3'
miRNA:   3'- -CGCC-GCUCGACUaGCGCGAG--CGG---UGC- -5'
22589 3' -59.5 NC_005091.1 + 34949 0.66 0.522339
Target:  5'- gGCGGCG-GCggacuUGAagGCGCgUCGCgGCu -3'
miRNA:   3'- -CGCCGCuCG-----ACUagCGCG-AGCGgUGc -5'
22589 3' -59.5 NC_005091.1 + 20339 0.66 0.530508
Target:  5'- aGCGGCGAcGCgucggccgauucGAUCaCGCUCGaCUGCGc -3'
miRNA:   3'- -CGCCGCU-CGa-----------CUAGcGCGAGC-GGUGC- -5'
22589 3' -59.5 NC_005091.1 + 36407 0.66 0.531532
Target:  5'- aCGGCGgaugacaAGCgGGUCG-GCaCGCCGCGa -3'
miRNA:   3'- cGCCGC-------UCGaCUAGCgCGaGCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 49550 0.66 0.532557
Target:  5'- uUGGCcuGCUcGUCGCGCUcgugCGCUACGu -3'
miRNA:   3'- cGCCGcuCGAcUAGCGCGA----GCGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.