miRNA display CGI


Results 41 - 54 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22589 3' -59.5 NC_005091.1 + 28425 0.69 0.372296
Target:  5'- aGUGGuCGAGC--AUCGUGCUgGCgACGg -3'
miRNA:   3'- -CGCC-GCUCGacUAGCGCGAgCGgUGC- -5'
22589 3' -59.5 NC_005091.1 + 25632 0.8 0.068912
Target:  5'- uGCGGCGGGCagccGAUCGCcgaGCUgGCCGCGc -3'
miRNA:   3'- -CGCCGCUCGa---CUAGCG---CGAgCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 42529 0.68 0.395535
Target:  5'- cGCGGCaaccGGCguaGAugguguuuucgaucUCGCGCUCGCCGa- -3'
miRNA:   3'- -CGCCGc---UCGa--CU--------------AGCGCGAGCGGUgc -5'
22589 3' -59.5 NC_005091.1 + 44340 0.68 0.398174
Target:  5'- aGCGcauCGAGaUUGAUCGCGUguUCGCuCACGu -3'
miRNA:   3'- -CGCc--GCUC-GACUAGCGCG--AGCG-GUGC- -5'
22589 3' -59.5 NC_005091.1 + 21167 0.68 0.398174
Target:  5'- cCGGuUGAGCUGGUCGUcugcgcuugaacGCUCGaCGCGc -3'
miRNA:   3'- cGCC-GCUCGACUAGCG------------CGAGCgGUGC- -5'
22589 3' -59.5 NC_005091.1 + 15380 0.67 0.434417
Target:  5'- aGCcaGCGaAGCUGAUCGuCGCUCGUgGUGg -3'
miRNA:   3'- -CGc-CGC-UCGACUAGC-GCGAGCGgUGC- -5'
22589 3' -59.5 NC_005091.1 + 31023 0.67 0.443773
Target:  5'- aCGGUGAGCgccgGAUCGCGgC-CGaaguCCACGc -3'
miRNA:   3'- cGCCGCUCGa---CUAGCGC-GaGC----GGUGC- -5'
22589 3' -59.5 NC_005091.1 + 26325 0.67 0.4725
Target:  5'- cUGGCGGcCUGcUCGCGCccggcCGCUACGa -3'
miRNA:   3'- cGCCGCUcGACuAGCGCGa----GCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 1084 0.67 0.476402
Target:  5'- cGCGGCaAGCUGAagcauaagucccggcUCGCGaUCGaCACGc -3'
miRNA:   3'- -CGCCGcUCGACU---------------AGCGCgAGCgGUGC- -5'
22589 3' -59.5 NC_005091.1 + 3920 0.67 0.486224
Target:  5'- uCGGCGcgaGGCau-UCGCGCUugcucucgaagcggcCGCCACGa -3'
miRNA:   3'- cGCCGC---UCGacuAGCGCGA---------------GCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 22761 0.66 0.492164
Target:  5'- cGCGGCGuucaGGC-GcgUGCGCUCGgCAuCGa -3'
miRNA:   3'- -CGCCGC----UCGaCuaGCGCGAGCgGU-GC- -5'
22589 3' -59.5 NC_005091.1 + 51672 0.66 0.501135
Target:  5'- -gGGCGAGC-GAUcaucgcgucauaCGCGCUCGUaucguaaCGCGg -3'
miRNA:   3'- cgCCGCUCGaCUA------------GCGCGAGCG-------GUGC- -5'
22589 3' -59.5 NC_005091.1 + 57177 0.66 0.502137
Target:  5'- gGCGGCGAagacGCUGuUCaaCGUUCGgCCAUGg -3'
miRNA:   3'- -CGCCGCU----CGACuAGc-GCGAGC-GGUGC- -5'
22589 3' -59.5 NC_005091.1 + 44 0.66 0.512197
Target:  5'- -gGGCGuuccuaucauggGGCUGAUUuccauucaagGCGUgCGCCACGg -3'
miRNA:   3'- cgCCGC------------UCGACUAG----------CGCGaGCGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.