miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22589 5' -53.3 NC_005091.1 + 6271 0.66 0.847464
Target:  5'- --gGUGguGGuGCG-GGUUGGCCgggUGCu -3'
miRNA:   3'- ccgCACguCC-CGCgCUAAUUGGa--ACG- -5'
22589 5' -53.3 NC_005091.1 + 28965 0.66 0.847464
Target:  5'- uGGCugcuucugGUGCAGGGCuG-GGUcAACCaUGCu -3'
miRNA:   3'- -CCG--------CACGUCCCG-CgCUAaUUGGaACG- -5'
22589 5' -53.3 NC_005091.1 + 51317 0.66 0.837791
Target:  5'- cGGCGUuacGCGGuugauaccguacaGuGCGCGGaacGCCUUGCg -3'
miRNA:   3'- -CCGCA---CGUC-------------C-CGCGCUaauUGGAACG- -5'
22589 5' -53.3 NC_005091.1 + 16284 0.66 0.811044
Target:  5'- gGGCGcgacgGC-GGGCGCGAcgaaguACCUccgugaagaUGCg -3'
miRNA:   3'- -CCGCa----CGuCCCGCGCUaau---UGGA---------ACG- -5'
22589 5' -53.3 NC_005091.1 + 26408 0.67 0.791644
Target:  5'- aGCG-GCcGGGCGCGAgcaGGCCgccagagagGCu -3'
miRNA:   3'- cCGCaCGuCCCGCGCUaa-UUGGaa-------CG- -5'
22589 5' -53.3 NC_005091.1 + 20192 0.67 0.781683
Target:  5'- uGGCGUGgAuGGGCaCGGUgu-CCgaugUGCg -3'
miRNA:   3'- -CCGCACgU-CCCGcGCUAauuGGa---ACG- -5'
22589 5' -53.3 NC_005091.1 + 51608 0.67 0.7509
Target:  5'- cGCG-GCAcGGGCGCGAUUcGGCaugauaUGCc -3'
miRNA:   3'- cCGCaCGU-CCCGCGCUAA-UUGga----ACG- -5'
22589 5' -53.3 NC_005091.1 + 52115 0.68 0.695097
Target:  5'- aGGCGgccgucgccggcGCGGGGCGCGuugcgGACgaUGUa -3'
miRNA:   3'- -CCGCa-----------CGUCCCGCGCuaa--UUGgaACG- -5'
22589 5' -53.3 NC_005091.1 + 53172 0.69 0.675306
Target:  5'- aGCGcGC-GGGCGCGA---GCCUuccggUGCa -3'
miRNA:   3'- cCGCaCGuCCCGCGCUaauUGGA-----ACG- -5'
22589 5' -53.3 NC_005091.1 + 27774 0.69 0.653161
Target:  5'- cGCGUGCGGGGUcucuCG-UUGACCgaugugGCg -3'
miRNA:   3'- cCGCACGUCCCGc---GCuAAUUGGaa----CG- -5'
22589 5' -53.3 NC_005091.1 + 52223 0.69 0.642053
Target:  5'- cGGUaGUGCGGGGCggcuuugacaGCGGcuugAACCUuUGCg -3'
miRNA:   3'- -CCG-CACGUCCCG----------CGCUaa--UUGGA-ACG- -5'
22589 5' -53.3 NC_005091.1 + 40646 0.69 0.642053
Target:  5'- cGGcCGUGCucGGCGCGGgauACCgacucgGCg -3'
miRNA:   3'- -CC-GCACGucCCGCGCUaauUGGaa----CG- -5'
22589 5' -53.3 NC_005091.1 + 34434 0.7 0.608714
Target:  5'- cGGCGUGCAGuacgacaaGCGCGGccGGCCgcaggGCu -3'
miRNA:   3'- -CCGCACGUCc-------CGCGCUaaUUGGaa---CG- -5'
22589 5' -53.3 NC_005091.1 + 24680 0.71 0.532052
Target:  5'- -cCGUcGaCAGGGCGCGc---GCCUUGCa -3'
miRNA:   3'- ccGCA-C-GUCCCGCGCuaauUGGAACG- -5'
22589 5' -53.3 NC_005091.1 + 51810 0.74 0.391894
Target:  5'- gGGCGUGCGGcuugcGCGCGAUUGuguacgGCCaugGCg -3'
miRNA:   3'- -CCGCACGUCc----CGCGCUAAU------UGGaa-CG- -5'
22589 5' -53.3 NC_005091.1 + 17743 0.75 0.331394
Target:  5'- uGGCGUGaAGGcCGCcguGUUGACCUUGCg -3'
miRNA:   3'- -CCGCACgUCCcGCGc--UAAUUGGAACG- -5'
22589 5' -53.3 NC_005091.1 + 3614 0.81 0.154279
Target:  5'- cGGCGUGCAggaucGGGaacaGCGAgacGCCUUGCg -3'
miRNA:   3'- -CCGCACGU-----CCCg---CGCUaauUGGAACG- -5'
22589 5' -53.3 NC_005091.1 + 26088 1.15 0.000606
Target:  5'- cGGCGUGCAGGGCGCGAUUAACCUUGCg -3'
miRNA:   3'- -CCGCACGUCCCGCGCUAAUUGGAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.