miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22590 3' -54.2 NC_005091.1 + 26218 1.07 0.001694
Target:  5'- aUGCAAGGACACAAUGCGGAAGCGGCa -3'
miRNA:   3'- -ACGUUCCUGUGUUACGCCUUCGCCGc -5'
22590 3' -54.2 NC_005091.1 + 44911 0.77 0.204847
Target:  5'- gGCAGucacGGAgGCAAUcGCGGAAGCaGGCGg -3'
miRNA:   3'- aCGUU----CCUgUGUUA-CGCCUUCG-CCGC- -5'
22590 3' -54.2 NC_005091.1 + 6597 0.75 0.295507
Target:  5'- gGCcAGG-CACGAUGUGGAucgagucgGGCGGCa -3'
miRNA:   3'- aCGuUCCuGUGUUACGCCU--------UCGCCGc -5'
22590 3' -54.2 NC_005091.1 + 48588 0.74 0.310751
Target:  5'- gGCGAGG-CGCGAaugGCGGGAG-GGCGc -3'
miRNA:   3'- aCGUUCCuGUGUUa--CGCCUUCgCCGC- -5'
22590 3' -54.2 NC_005091.1 + 6184 0.73 0.368744
Target:  5'- cGCGGGGGCu---UGCGGGcgacgagccgaAGCGGCGc -3'
miRNA:   3'- aCGUUCCUGuguuACGCCU-----------UCGCCGC- -5'
22590 3' -54.2 NC_005091.1 + 20209 0.72 0.414487
Target:  5'- ----cGGACACGAaGCGGAcGUGGCGu -3'
miRNA:   3'- acguuCCUGUGUUaCGCCUuCGCCGC- -5'
22590 3' -54.2 NC_005091.1 + 57091 0.71 0.453493
Target:  5'- gGCAAGaaGACaACAuUGCGGccGAGCGGCu -3'
miRNA:   3'- aCGUUC--CUG-UGUuACGCC--UUCGCCGc -5'
22590 3' -54.2 NC_005091.1 + 16446 0.7 0.50385
Target:  5'- cGCAuccggaaaguGGAUcaacaagACGAUcaGCGGggGCGGCGg -3'
miRNA:   3'- aCGUu---------CCUG-------UGUUA--CGCCuuCGCCGC- -5'
22590 3' -54.2 NC_005091.1 + 26975 0.7 0.504904
Target:  5'- cGCAGGGACggACAGUcuCGGcaAAGCGGCc -3'
miRNA:   3'- aCGUUCCUG--UGUUAc-GCC--UUCGCCGc -5'
22590 3' -54.2 NC_005091.1 + 7178 0.7 0.536929
Target:  5'- cGCGccGACACGAgcaaGaCGGAuGGCGGCGa -3'
miRNA:   3'- aCGUucCUGUGUUa---C-GCCU-UCGCCGC- -5'
22590 3' -54.2 NC_005091.1 + 49039 0.7 0.544505
Target:  5'- gUGCugcGGGCGCGcugcugcgcaccguGUGCGGgcGgGGCGa -3'
miRNA:   3'- -ACGuu-CCUGUGU--------------UACGCCuuCgCCGC- -5'
22590 3' -54.2 NC_005091.1 + 784 0.7 0.547763
Target:  5'- aGCAGcccGGACAuCGAccacUGCGGAuucgcGCGGCGc -3'
miRNA:   3'- aCGUU---CCUGU-GUU----ACGCCUu----CGCCGC- -5'
22590 3' -54.2 NC_005091.1 + 44845 0.69 0.568529
Target:  5'- gGCAAcGAC-CAcgGCGGccggcaaGGGCGGCGg -3'
miRNA:   3'- aCGUUcCUGuGUuaCGCC-------UUCGCCGC- -5'
22590 3' -54.2 NC_005091.1 + 15073 0.69 0.580643
Target:  5'- aUGCGAaccaccGGAUGCGcccaugacagGCGGGAGCGGUGu -3'
miRNA:   3'- -ACGUU------CCUGUGUua--------CGCCUUCGCCGC- -5'
22590 3' -54.2 NC_005091.1 + 14834 0.69 0.580643
Target:  5'- aUGCGAaccaccGGAUGCGcccaugacagGCGGGAGCGGUGu -3'
miRNA:   3'- -ACGUU------CCUGUGUua--------CGCCUUCGCCGC- -5'
22590 3' -54.2 NC_005091.1 + 14954 0.68 0.62505
Target:  5'- aUGCGAaccaccGGAUggcccaugACAG-GCGGGAGCGGUGu -3'
miRNA:   3'- -ACGUU------CCUG--------UGUUaCGCCUUCGCCGC- -5'
22590 3' -54.2 NC_005091.1 + 32159 0.68 0.64733
Target:  5'- gGCAAGGGCaACGAaGCuGAaggcaagaagGGCGGCa -3'
miRNA:   3'- aCGUUCCUG-UGUUaCGcCU----------UCGCCGc -5'
22590 3' -54.2 NC_005091.1 + 10722 0.68 0.64733
Target:  5'- cGCAAGcACcCGAUGaaGGAGUGGCGg -3'
miRNA:   3'- aCGUUCcUGuGUUACgcCUUCGCCGC- -5'
22590 3' -54.2 NC_005091.1 + 53071 0.68 0.64733
Target:  5'- gUGCGccGGuCAUggUGCGGGGuucgcugaucGCGGCGa -3'
miRNA:   3'- -ACGUu-CCuGUGuuACGCCUU----------CGCCGC- -5'
22590 3' -54.2 NC_005091.1 + 10252 0.67 0.679512
Target:  5'- cGCAggcAGGACACGcgcacaucaggaaGUGCGGcgcuCGGCGc -3'
miRNA:   3'- aCGU---UCCUGUGU-------------UACGCCuuc-GCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.