Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22590 | 3' | -54.2 | NC_005091.1 | + | 26218 | 1.07 | 0.001694 |
Target: 5'- aUGCAAGGACACAAUGCGGAAGCGGCa -3' miRNA: 3'- -ACGUUCCUGUGUUACGCCUUCGCCGc -5' |
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22590 | 3' | -54.2 | NC_005091.1 | + | 44911 | 0.77 | 0.204847 |
Target: 5'- gGCAGucacGGAgGCAAUcGCGGAAGCaGGCGg -3' miRNA: 3'- aCGUU----CCUgUGUUA-CGCCUUCG-CCGC- -5' |
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22590 | 3' | -54.2 | NC_005091.1 | + | 6597 | 0.75 | 0.295507 |
Target: 5'- gGCcAGG-CACGAUGUGGAucgagucgGGCGGCa -3' miRNA: 3'- aCGuUCCuGUGUUACGCCU--------UCGCCGc -5' |
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22590 | 3' | -54.2 | NC_005091.1 | + | 48588 | 0.74 | 0.310751 |
Target: 5'- gGCGAGG-CGCGAaugGCGGGAG-GGCGc -3' miRNA: 3'- aCGUUCCuGUGUUa--CGCCUUCgCCGC- -5' |
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22590 | 3' | -54.2 | NC_005091.1 | + | 6184 | 0.73 | 0.368744 |
Target: 5'- cGCGGGGGCu---UGCGGGcgacgagccgaAGCGGCGc -3' miRNA: 3'- aCGUUCCUGuguuACGCCU-----------UCGCCGC- -5' |
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22590 | 3' | -54.2 | NC_005091.1 | + | 20209 | 0.72 | 0.414487 |
Target: 5'- ----cGGACACGAaGCGGAcGUGGCGu -3' miRNA: 3'- acguuCCUGUGUUaCGCCUuCGCCGC- -5' |
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22590 | 3' | -54.2 | NC_005091.1 | + | 57091 | 0.71 | 0.453493 |
Target: 5'- gGCAAGaaGACaACAuUGCGGccGAGCGGCu -3' miRNA: 3'- aCGUUC--CUG-UGUuACGCC--UUCGCCGc -5' |
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22590 | 3' | -54.2 | NC_005091.1 | + | 16446 | 0.7 | 0.50385 |
Target: 5'- cGCAuccggaaaguGGAUcaacaagACGAUcaGCGGggGCGGCGg -3' miRNA: 3'- aCGUu---------CCUG-------UGUUA--CGCCuuCGCCGC- -5' |
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22590 | 3' | -54.2 | NC_005091.1 | + | 26975 | 0.7 | 0.504904 |
Target: 5'- cGCAGGGACggACAGUcuCGGcaAAGCGGCc -3' miRNA: 3'- aCGUUCCUG--UGUUAc-GCC--UUCGCCGc -5' |
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22590 | 3' | -54.2 | NC_005091.1 | + | 7178 | 0.7 | 0.536929 |
Target: 5'- cGCGccGACACGAgcaaGaCGGAuGGCGGCGa -3' miRNA: 3'- aCGUucCUGUGUUa---C-GCCU-UCGCCGC- -5' |
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22590 | 3' | -54.2 | NC_005091.1 | + | 49039 | 0.7 | 0.544505 |
Target: 5'- gUGCugcGGGCGCGcugcugcgcaccguGUGCGGgcGgGGCGa -3' miRNA: 3'- -ACGuu-CCUGUGU--------------UACGCCuuCgCCGC- -5' |
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22590 | 3' | -54.2 | NC_005091.1 | + | 784 | 0.7 | 0.547763 |
Target: 5'- aGCAGcccGGACAuCGAccacUGCGGAuucgcGCGGCGc -3' miRNA: 3'- aCGUU---CCUGU-GUU----ACGCCUu----CGCCGC- -5' |
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22590 | 3' | -54.2 | NC_005091.1 | + | 44845 | 0.69 | 0.568529 |
Target: 5'- gGCAAcGAC-CAcgGCGGccggcaaGGGCGGCGg -3' miRNA: 3'- aCGUUcCUGuGUuaCGCC-------UUCGCCGC- -5' |
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22590 | 3' | -54.2 | NC_005091.1 | + | 15073 | 0.69 | 0.580643 |
Target: 5'- aUGCGAaccaccGGAUGCGcccaugacagGCGGGAGCGGUGu -3' miRNA: 3'- -ACGUU------CCUGUGUua--------CGCCUUCGCCGC- -5' |
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22590 | 3' | -54.2 | NC_005091.1 | + | 14834 | 0.69 | 0.580643 |
Target: 5'- aUGCGAaccaccGGAUGCGcccaugacagGCGGGAGCGGUGu -3' miRNA: 3'- -ACGUU------CCUGUGUua--------CGCCUUCGCCGC- -5' |
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22590 | 3' | -54.2 | NC_005091.1 | + | 14954 | 0.68 | 0.62505 |
Target: 5'- aUGCGAaccaccGGAUggcccaugACAG-GCGGGAGCGGUGu -3' miRNA: 3'- -ACGUU------CCUG--------UGUUaCGCCUUCGCCGC- -5' |
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22590 | 3' | -54.2 | NC_005091.1 | + | 53071 | 0.68 | 0.64733 |
Target: 5'- gUGCGccGGuCAUggUGCGGGGuucgcugaucGCGGCGa -3' miRNA: 3'- -ACGUu-CCuGUGuuACGCCUU----------CGCCGC- -5' |
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22590 | 3' | -54.2 | NC_005091.1 | + | 32159 | 0.68 | 0.64733 |
Target: 5'- gGCAAGGGCaACGAaGCuGAaggcaagaagGGCGGCa -3' miRNA: 3'- aCGUUCCUG-UGUUaCGcCU----------UCGCCGc -5' |
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22590 | 3' | -54.2 | NC_005091.1 | + | 10722 | 0.68 | 0.64733 |
Target: 5'- cGCAAGcACcCGAUGaaGGAGUGGCGg -3' miRNA: 3'- aCGUUCcUGuGUUACgcCUUCGCCGC- -5' |
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22590 | 3' | -54.2 | NC_005091.1 | + | 10252 | 0.67 | 0.679512 |
Target: 5'- cGCAggcAGGACACGcgcacaucaggaaGUGCGGcgcuCGGCGc -3' miRNA: 3'- aCGU---UCCUGUGU-------------UACGCCuuc-GCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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