miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22590 3' -54.2 NC_005091.1 + 35088 0.67 0.72428
Target:  5'- cGCAAugcGGugAC--UGCGGcccguGCGGCGg -3'
miRNA:   3'- aCGUU---CCugUGuuACGCCuu---CGCCGC- -5'
22590 3' -54.2 NC_005091.1 + 36300 0.66 0.776654
Target:  5'- -----aGACGCAAUGCGcGAGcgucGCGGCGu -3'
miRNA:   3'- acguucCUGUGUUACGC-CUU----CGCCGC- -5'
22590 3' -54.2 NC_005091.1 + 37854 0.66 0.786716
Target:  5'- cGcCAAGGACACccgaucuacaaAGUgGCcGAGGCGGCc -3'
miRNA:   3'- aC-GUUCCUGUG-----------UUA-CGcCUUCGCCGc -5'
22590 3' -54.2 NC_005091.1 + 41194 0.66 0.756081
Target:  5'- -aCAAGGACGaacCGGUGCugacGggGCGGUGc -3'
miRNA:   3'- acGUUCCUGU---GUUACGc---CuuCGCCGC- -5'
22590 3' -54.2 NC_005091.1 + 44845 0.69 0.568529
Target:  5'- gGCAAcGAC-CAcgGCGGccggcaaGGGCGGCGg -3'
miRNA:   3'- aCGUUcCUGuGUuaCGCC-------UUCGCCGC- -5'
22590 3' -54.2 NC_005091.1 + 44911 0.77 0.204847
Target:  5'- gGCAGucacGGAgGCAAUcGCGGAAGCaGGCGg -3'
miRNA:   3'- aCGUU----CCUgUGUUA-CGCCUUCG-CCGC- -5'
22590 3' -54.2 NC_005091.1 + 48588 0.74 0.310751
Target:  5'- gGCGAGG-CGCGAaugGCGGGAG-GGCGc -3'
miRNA:   3'- aCGUUCCuGUGUUa--CGCCUUCgCCGC- -5'
22590 3' -54.2 NC_005091.1 + 49039 0.7 0.544505
Target:  5'- gUGCugcGGGCGCGcugcugcgcaccguGUGCGGgcGgGGCGa -3'
miRNA:   3'- -ACGuu-CCUGUGU--------------UACGCCuuCgCCGC- -5'
22590 3' -54.2 NC_005091.1 + 49173 0.66 0.756081
Target:  5'- gGCGAGuuGAUACcaguacccaccGAUGCGGAugacguGCGGCu -3'
miRNA:   3'- aCGUUC--CUGUG-----------UUACGCCUu-----CGCCGc -5'
22590 3' -54.2 NC_005091.1 + 51611 0.67 0.702589
Target:  5'- gGCAcGGGCGCGAuucggcaugauaUGCcgaauGAAGCGGCu -3'
miRNA:   3'- aCGUuCCUGUGUU------------ACGc----CUUCGCCGc -5'
22590 3' -54.2 NC_005091.1 + 53071 0.68 0.64733
Target:  5'- gUGCGccGGuCAUggUGCGGGGuucgcugaucGCGGCGa -3'
miRNA:   3'- -ACGUu-CCuGUGuuACGCCUU----------CGCCGC- -5'
22590 3' -54.2 NC_005091.1 + 57091 0.71 0.453493
Target:  5'- gGCAAGaaGACaACAuUGCGGccGAGCGGCu -3'
miRNA:   3'- aCGUUC--CUG-UGUuACGCC--UUCGCCGc -5'
22590 3' -54.2 NC_005091.1 + 57221 0.67 0.702589
Target:  5'- aGCcagucGGGCgGCGAgucGCGGAAGCuGGCGu -3'
miRNA:   3'- aCGuu---CCUG-UGUUa--CGCCUUCG-CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.