miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22590 5' -56.2 NC_005091.1 + 31381 0.67 0.590561
Target:  5'- aUCGCUGCUCG--UGgAUaCACGACGa -3'
miRNA:   3'- aAGCGACGAGCugGCgUA-GUGCUGCc -5'
22590 5' -56.2 NC_005091.1 + 23481 0.68 0.579764
Target:  5'- -gCGCUGCUCGGuCUGUu---CGGCGGc -3'
miRNA:   3'- aaGCGACGAGCU-GGCGuaguGCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 1376 0.68 0.579764
Target:  5'- aUCGaCUGCUUG-CCGCAcgUCGCGAagaacaccugcCGGu -3'
miRNA:   3'- aAGC-GACGAGCuGGCGU--AGUGCU-----------GCC- -5'
22590 5' -56.2 NC_005091.1 + 31215 0.68 0.558304
Target:  5'- aUCgGCUGCUCG-CCGg--CACGACGc -3'
miRNA:   3'- aAG-CGACGAGCuGGCguaGUGCUGCc -5'
22590 5' -56.2 NC_005091.1 + 31610 0.68 0.547657
Target:  5'- --gGCUGCUUGGCguucuucgaaCGUAUCGgCGGCGGc -3'
miRNA:   3'- aagCGACGAGCUG----------GCGUAGU-GCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 9786 0.68 0.547657
Target:  5'- cUCGCUGgaccCUCGGCCGCugcgCGCGAa-- -3'
miRNA:   3'- aAGCGAC----GAGCUGGCGua--GUGCUgcc -5'
22590 5' -56.2 NC_005091.1 + 19448 0.68 0.537075
Target:  5'- aUCGCUGCaccagcaaUCG-CCGaa-CACGACGGc -3'
miRNA:   3'- aAGCGACG--------AGCuGGCguaGUGCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 33507 0.68 0.537075
Target:  5'- --gGCcgGCaUCGAuCCGCAUCACGGCu- -3'
miRNA:   3'- aagCGa-CG-AGCU-GGCGUAGUGCUGcc -5'
22590 5' -56.2 NC_005091.1 + 7274 0.68 0.533914
Target:  5'- cUCGCUGCUCG-CCGCcauccgucuugcucGUguCGGCGcGg -3'
miRNA:   3'- aAGCGACGAGCuGGCG--------------UAguGCUGC-C- -5'
22590 5' -56.2 NC_005091.1 + 21506 0.69 0.516132
Target:  5'- aUCGCcgcaagcgUGCUCuGCCGCGUCGCcuCGGc -3'
miRNA:   3'- aAGCG--------ACGAGcUGGCGUAGUGcuGCC- -5'
22590 5' -56.2 NC_005091.1 + 36489 0.69 0.516132
Target:  5'- -gUGCUGCggCGGCCGgAUCGaaGCGGa -3'
miRNA:   3'- aaGCGACGa-GCUGGCgUAGUgcUGCC- -5'
22590 5' -56.2 NC_005091.1 + 26686 0.69 0.505784
Target:  5'- cUUGCUGCUgCGGCgGCcg-GCGGCGGc -3'
miRNA:   3'- aAGCGACGA-GCUGgCGuagUGCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 32120 0.69 0.505784
Target:  5'- -gUGCUGCUCGcgucGCuCGcCAagGCGACGGg -3'
miRNA:   3'- aaGCGACGAGC----UG-GC-GUagUGCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 16797 0.69 0.485363
Target:  5'- aUCGCc-CUCGGCCG-GUgACGACGGa -3'
miRNA:   3'- aAGCGacGAGCUGGCgUAgUGCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 811 0.69 0.475301
Target:  5'- -gCGCUGCgCuGCCGCGUgggugUACGGCGGc -3'
miRNA:   3'- aaGCGACGaGcUGGCGUA-----GUGCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 13521 0.69 0.475301
Target:  5'- gUCGCUGCUCGacGCCGgGUCGCu---- -3'
miRNA:   3'- aAGCGACGAGC--UGGCgUAGUGcugcc -5'
22590 5' -56.2 NC_005091.1 + 9004 0.7 0.455495
Target:  5'- uUUCaGgUGCUCGGCCGCAgcuuCGuACGGg -3'
miRNA:   3'- -AAG-CgACGAGCUGGCGUagu-GC-UGCC- -5'
22590 5' -56.2 NC_005091.1 + 55023 0.7 0.455495
Target:  5'- -gCGCggcGCUUGGCgagCGCGUUGCGGCGGc -3'
miRNA:   3'- aaGCGa--CGAGCUG---GCGUAGUGCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 31148 0.7 0.445761
Target:  5'- -gCGCUGUUCGAgCUGCGaaucCGCGACGa -3'
miRNA:   3'- aaGCGACGAGCU-GGCGUa---GUGCUGCc -5'
22590 5' -56.2 NC_005091.1 + 42042 0.7 0.436145
Target:  5'- -gUGCUGCUCGACC---UCGCGAaucCGGa -3'
miRNA:   3'- aaGCGACGAGCUGGcguAGUGCU---GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.