Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22591 | 5' | -55.5 | NC_005091.1 | + | 9372 | 0.68 | 0.55565 |
Target: 5'- gCACGGCcagcCGGUCggCGGCcagcGGCGAGCa -3' miRNA: 3'- aGUGUCGc---GUCAGa-GUCGu---CCGCUUG- -5' |
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22591 | 5' | -55.5 | NC_005091.1 | + | 11416 | 0.67 | 0.599602 |
Target: 5'- gCACAuGCGCAGUCgaacgCGGCAGcCGcucAACa -3' miRNA: 3'- aGUGU-CGCGUCAGa----GUCGUCcGC---UUG- -5' |
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22591 | 5' | -55.5 | NC_005091.1 | + | 53063 | 0.67 | 0.609574 |
Target: 5'- gUCAUGGUGCGGggUUCgcugaucgcggcgAGCAuGGCGAACg -3' miRNA: 3'- -AGUGUCGCGUCa-GAG-------------UCGU-CCGCUUG- -5' |
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22591 | 5' | -55.5 | NC_005091.1 | + | 24840 | 0.67 | 0.621783 |
Target: 5'- gUCGCAGaaCAG-CUCGGCAGGgcaucaCGGACg -3' miRNA: 3'- -AGUGUCgcGUCaGAGUCGUCC------GCUUG- -5' |
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22591 | 5' | -55.5 | NC_005091.1 | + | 26547 | 0.67 | 0.632892 |
Target: 5'- ---aAGCGCaAGUCgccgAGCAGGCaGAGCa -3' miRNA: 3'- agugUCGCG-UCAGag--UCGUCCG-CUUG- -5' |
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22591 | 5' | -55.5 | NC_005091.1 | + | 48884 | 0.67 | 0.644 |
Target: 5'- gCGCAGCGC-GUCUCAcaGCuAGGUccGAAUc -3' miRNA: 3'- aGUGUCGCGuCAGAGU--CG-UCCG--CUUG- -5' |
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22591 | 5' | -55.5 | NC_005091.1 | + | 6191 | 0.67 | 0.644 |
Target: 5'- cUCcUAGCGCGGgggCUU-GCGGGCGAc- -3' miRNA: 3'- -AGuGUCGCGUCa--GAGuCGUCCGCUug -5' |
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22591 | 5' | -55.5 | NC_005091.1 | + | 41046 | 0.66 | 0.655097 |
Target: 5'- gCGCAGCGCAcg--CAGCgcuGGGCGGGa -3' miRNA: 3'- aGUGUCGCGUcagaGUCG---UCCGCUUg -5' |
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22591 | 5' | -55.5 | NC_005091.1 | + | 17515 | 0.66 | 0.666173 |
Target: 5'- cCGCA-CGCAGaccacaUCUUcgguauuGCAGGCGAACg -3' miRNA: 3'- aGUGUcGCGUC------AGAGu------CGUCCGCUUG- -5' |
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22591 | 5' | -55.5 | NC_005091.1 | + | 47421 | 0.66 | 0.684921 |
Target: 5'- -gGCAGCGC-GUCUuugaaguucgucagCAGCAGGUauGCg -3' miRNA: 3'- agUGUCGCGuCAGA--------------GUCGUCCGcuUG- -5' |
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22591 | 5' | -55.5 | NC_005091.1 | + | 35140 | 0.66 | 0.688216 |
Target: 5'- uUCACGGCgGCGaa-UCAGCAGGCc--- -3' miRNA: 3'- -AGUGUCG-CGUcagAGUCGUCCGcuug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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