miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22592 3' -55.3 NC_005091.1 + 35977 0.66 0.731728
Target:  5'- aGAGUGGGUGAA-GCCGCAugCGUAu -3'
miRNA:   3'- gUUUGUCCGCUUcCGGCGUugGCGUc -5'
22592 3' -55.3 NC_005091.1 + 23062 0.66 0.731728
Target:  5'- -----cGGCaGAAcGCCGUAACCGCAc -3'
miRNA:   3'- guuuguCCG-CUUcCGGCGUUGGCGUc -5'
22592 3' -55.3 NC_005091.1 + 26258 0.66 0.730666
Target:  5'- aCGAGCgAGGCGAGcaucaaaagccuuGGCguuCGCAucguucACCGCAGc -3'
miRNA:   3'- -GUUUG-UCCGCUU-------------CCG---GCGU------UGGCGUC- -5'
22592 3' -55.3 NC_005091.1 + 19649 0.66 0.725342
Target:  5'- uCGAACGGGCuacGGCCGgGcaucccguuauacccGCCGUAGu -3'
miRNA:   3'- -GUUUGUCCGcuuCCGGCgU---------------UGGCGUC- -5'
22592 3' -55.3 NC_005091.1 + 43001 0.66 0.721065
Target:  5'- --uACGGGUcuacAGGCCGUcguCCGCAGu -3'
miRNA:   3'- guuUGUCCGcu--UCCGGCGuu-GGCGUC- -5'
22592 3' -55.3 NC_005091.1 + 55878 0.66 0.710313
Target:  5'- cCGAGCAgucGGCGca-GCCGCAGuuGCAa -3'
miRNA:   3'- -GUUUGU---CCGCuucCGGCGUUggCGUc -5'
22592 3' -55.3 NC_005091.1 + 50380 0.66 0.710313
Target:  5'- ---cCGGGUGAucGGCCGCgAGCCGaCGa -3'
miRNA:   3'- guuuGUCCGCUu-CCGGCG-UUGGC-GUc -5'
22592 3' -55.3 NC_005091.1 + 24322 0.66 0.710313
Target:  5'- -cGAUAGGCu--GGCCGuCGACCGUc- -3'
miRNA:   3'- guUUGUCCGcuuCCGGC-GUUGGCGuc -5'
22592 3' -55.3 NC_005091.1 + 16046 0.66 0.699484
Target:  5'- aCAAGCAGGUcaucgcgugGAAcGCCGCGAgCGCc- -3'
miRNA:   3'- -GUUUGUCCG---------CUUcCGGCGUUgGCGuc -5'
22592 3' -55.3 NC_005091.1 + 13972 0.66 0.699484
Target:  5'- uCAAcCAGaCGAcGGCUGCAucgucggcGCCGCAGc -3'
miRNA:   3'- -GUUuGUCcGCUuCCGGCGU--------UGGCGUC- -5'
22592 3' -55.3 NC_005091.1 + 19563 0.66 0.688588
Target:  5'- --cGCAGGCcacgGAGGGCac--GCCGCAGg -3'
miRNA:   3'- guuUGUCCG----CUUCCGgcguUGGCGUC- -5'
22592 3' -55.3 NC_005091.1 + 6471 0.66 0.677638
Target:  5'- gAAGCAGGCGcgacggauGGCgaaCGCAuCCGCAu -3'
miRNA:   3'- gUUUGUCCGCuu------CCG---GCGUuGGCGUc -5'
22592 3' -55.3 NC_005091.1 + 26862 0.66 0.677638
Target:  5'- uCGAuCAGGCGAAGacgcgaGCCGguGCggcguCGCAGg -3'
miRNA:   3'- -GUUuGUCCGCUUC------CGGCguUG-----GCGUC- -5'
22592 3' -55.3 NC_005091.1 + 38861 0.67 0.666643
Target:  5'- gCGAACAGGUGuucauAGGUCucgGCAGCCgGCGu -3'
miRNA:   3'- -GUUUGUCCGCu----UCCGG---CGUUGG-CGUc -5'
22592 3' -55.3 NC_005091.1 + 40299 0.67 0.66003
Target:  5'- aAGACAGGCGAguuacucuggaacgaAGaCgGCucGCCGCAGa -3'
miRNA:   3'- gUUUGUCCGCU---------------UCcGgCGu-UGGCGUC- -5'
22592 3' -55.3 NC_005091.1 + 15526 0.67 0.655616
Target:  5'- --cACGGGUGcGGGGCCGUAcACCGauCAGg -3'
miRNA:   3'- guuUGUCCGC-UUCCGGCGU-UGGC--GUC- -5'
22592 3' -55.3 NC_005091.1 + 53036 0.67 0.644568
Target:  5'- gCGAGCAuGGCGAAcGGCUGC--UCGCGu -3'
miRNA:   3'- -GUUUGU-CCGCUU-CCGGCGuuGGCGUc -5'
22592 3' -55.3 NC_005091.1 + 52189 0.67 0.637933
Target:  5'- --cGCcGGCGAcGGCCGCcuuuucacggcauacGGCCGCGc -3'
miRNA:   3'- guuUGuCCGCUuCCGGCG---------------UUGGCGUc -5'
22592 3' -55.3 NC_005091.1 + 31914 0.67 0.611393
Target:  5'- --cGCGGGCGAAcguGGCUGCuGCCaCGGu -3'
miRNA:   3'- guuUGUCCGCUU---CCGGCGuUGGcGUC- -5'
22592 3' -55.3 NC_005091.1 + 34568 0.67 0.611393
Target:  5'- aAAACcGGCGAAGuGCUGgCGACUGCc- -3'
miRNA:   3'- gUUUGuCCGCUUC-CGGC-GUUGGCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.