miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22592 3' -55.3 NC_005091.1 + 26997 1.09 0.000965
Target:  5'- uCAAACAGGCGAAGGCCGCAACCGCAGg -3'
miRNA:   3'- -GUUUGUCCGCUUCCGGCGUUGGCGUC- -5'
22592 3' -55.3 NC_005091.1 + 19968 0.78 0.148131
Target:  5'- gAGGCGGGUucGAAGGCCGC-ACCGUGGu -3'
miRNA:   3'- gUUUGUCCG--CUUCCGGCGuUGGCGUC- -5'
22592 3' -55.3 NC_005091.1 + 34538 0.75 0.247141
Target:  5'- uCAGACcGGUGAAGGUCGaGAUCGCAGc -3'
miRNA:   3'- -GUUUGuCCGCUUCCGGCgUUGGCGUC- -5'
22592 3' -55.3 NC_005091.1 + 4845 0.75 0.253637
Target:  5'- uCAAGCGGGCGAA-GCCGUAugUGCu- -3'
miRNA:   3'- -GUUUGUCCGCUUcCGGCGUugGCGuc -5'
22592 3' -55.3 NC_005091.1 + 44889 0.74 0.28103
Target:  5'- gAAGCAGGCGGuacGGGCgGCGGCaagGCGGc -3'
miRNA:   3'- gUUUGUCCGCU---UCCGgCGUUGg--CGUC- -5'
22592 3' -55.3 NC_005091.1 + 26500 0.73 0.295584
Target:  5'- -cAACAGGCGcaggcaacgcAGGCUGCGgcuGCCGCAGc -3'
miRNA:   3'- guUUGUCCGCu---------UCCGGCGU---UGGCGUC- -5'
22592 3' -55.3 NC_005091.1 + 26391 0.73 0.295584
Target:  5'- gCAuuCAGGCGGucugcuGCgGCAGCCGCAGc -3'
miRNA:   3'- -GUuuGUCCGCUuc----CGgCGUUGGCGUC- -5'
22592 3' -55.3 NC_005091.1 + 52790 0.73 0.318505
Target:  5'- gGGACGcggcGGCGAucAGGCCGCAcGCgGCAGc -3'
miRNA:   3'- gUUUGU----CCGCU--UCCGGCGU-UGgCGUC- -5'
22592 3' -55.3 NC_005091.1 + 44288 0.73 0.326436
Target:  5'- --cGCAGGCGAAGacGCCGCAuACgGCAc -3'
miRNA:   3'- guuUGUCCGCUUC--CGGCGU-UGgCGUc -5'
22592 3' -55.3 NC_005091.1 + 42495 0.72 0.342735
Target:  5'- aCGAGCcgaucGGCGAAGGCCGCAucaGCGa -3'
miRNA:   3'- -GUUUGu----CCGCUUCCGGCGUuggCGUc -5'
22592 3' -55.3 NC_005091.1 + 15407 0.72 0.368267
Target:  5'- aCGGGCAGGCGAucacauGGUCGgcAUCGCAGg -3'
miRNA:   3'- -GUUUGUCCGCUu-----CCGGCguUGGCGUC- -5'
22592 3' -55.3 NC_005091.1 + 23892 0.72 0.37795
Target:  5'- gGAAgAGGCGAaccagaaaaucaAGGCCGCGuacacggagagcggcCCGCAGa -3'
miRNA:   3'- gUUUgUCCGCU------------UCCGGCGUu--------------GGCGUC- -5'
22592 3' -55.3 NC_005091.1 + 29619 0.71 0.404285
Target:  5'- --uGCGGGCGAgcgggaGGGCCGUAcGCUGCGc -3'
miRNA:   3'- guuUGUCCGCU------UCCGGCGU-UGGCGUc -5'
22592 3' -55.3 NC_005091.1 + 42305 0.71 0.413631
Target:  5'- gCAGGCAGGCGAaaggaauuacAGGCCGCcguugucgUCGUAGc -3'
miRNA:   3'- -GUUUGUCCGCU----------UCCGGCGuu------GGCGUC- -5'
22592 3' -55.3 NC_005091.1 + 11384 0.7 0.442449
Target:  5'- ---cCGGGCGucGGCCGCGucacGCUGCGc -3'
miRNA:   3'- guuuGUCCGCuuCCGGCGU----UGGCGUc -5'
22592 3' -55.3 NC_005091.1 + 26397 0.7 0.462279
Target:  5'- gCGAGCAGGCcgccagaGAGGCUGCug-CGCAGg -3'
miRNA:   3'- -GUUUGUCCGc------UUCCGGCGuugGCGUC- -5'
22592 3' -55.3 NC_005091.1 + 11486 0.7 0.462279
Target:  5'- gAAACAGGgGcAGGCCG-AAgCGCAGc -3'
miRNA:   3'- gUUUGUCCgCuUCCGGCgUUgGCGUC- -5'
22592 3' -55.3 NC_005091.1 + 46339 0.7 0.472367
Target:  5'- uCAAGCuGGCGAAGgaaGCCGCcgaaaaAACCGCc- -3'
miRNA:   3'- -GUUUGuCCGCUUC---CGGCG------UUGGCGuc -5'
22592 3' -55.3 NC_005091.1 + 5185 0.69 0.513771
Target:  5'- aGGGCAGGgGAAGGUgCGCAuUCGCGc -3'
miRNA:   3'- gUUUGUCCgCUUCCG-GCGUuGGCGUc -5'
22592 3' -55.3 NC_005091.1 + 28363 0.69 0.513771
Target:  5'- -cAGCaAGGCGAAGGUcaCGCAaGCCGcCAGc -3'
miRNA:   3'- guUUG-UCCGCUUCCG--GCGU-UGGC-GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.