Results 21 - 40 of 45 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22592 | 3' | -55.3 | NC_005091.1 | + | 11438 | 0.67 | 0.610289 |
Target: 5'- uCAAACA-GCGGAGGuCCGUGACgcacaugCGCAGu -3' miRNA: 3'- -GUUUGUcCGCUUCC-GGCGUUG-------GCGUC- -5' |
|||||||
22592 | 3' | -55.3 | NC_005091.1 | + | 7053 | 0.68 | 0.567455 |
Target: 5'- aCGGGCAGGaGAAGGCCGCcaa-GCGa -3' miRNA: 3'- -GUUUGUCCgCUUCCGGCGuuggCGUc -5' |
|||||||
22592 | 3' | -55.3 | NC_005091.1 | + | 32099 | 0.68 | 0.556582 |
Target: 5'- ----aAGGCGAcGGGCCGCAAggaccugauCCaGCAGa -3' miRNA: 3'- guuugUCCGCU-UCCGGCGUU---------GG-CGUC- -5' |
|||||||
22592 | 3' | -55.3 | NC_005091.1 | + | 9515 | 0.69 | 0.524357 |
Target: 5'- --cACGGGuCGuggcacaucgcGAGGCCgGCAGCCGCGa -3' miRNA: 3'- guuUGUCC-GC-----------UUCCGG-CGUUGGCGUc -5' |
|||||||
22592 | 3' | -55.3 | NC_005091.1 | + | 26254 | 0.69 | 0.524357 |
Target: 5'- -cAGCAGGCGAAcGGCauucgaGCAacgACCGCu- -3' miRNA: 3'- guUUGUCCGCUU-CCGg-----CGU---UGGCGuc -5' |
|||||||
22592 | 3' | -55.3 | NC_005091.1 | + | 28363 | 0.69 | 0.513771 |
Target: 5'- -cAGCaAGGCGAAGGUcaCGCAaGCCGcCAGc -3' miRNA: 3'- guUUG-UCCGCUUCCG--GCGU-UGGC-GUC- -5' |
|||||||
22592 | 3' | -55.3 | NC_005091.1 | + | 5185 | 0.69 | 0.513771 |
Target: 5'- aGGGCAGGgGAAGGUgCGCAuUCGCGc -3' miRNA: 3'- gUUUGUCCgCUUCCG-GCGUuGGCGUc -5' |
|||||||
22592 | 3' | -55.3 | NC_005091.1 | + | 46339 | 0.7 | 0.472367 |
Target: 5'- uCAAGCuGGCGAAGgaaGCCGCcgaaaaAACCGCc- -3' miRNA: 3'- -GUUUGuCCGCUUC---CGGCG------UUGGCGuc -5' |
|||||||
22592 | 3' | -55.3 | NC_005091.1 | + | 11486 | 0.7 | 0.462279 |
Target: 5'- gAAACAGGgGcAGGCCG-AAgCGCAGc -3' miRNA: 3'- gUUUGUCCgCuUCCGGCgUUgGCGUC- -5' |
|||||||
22592 | 3' | -55.3 | NC_005091.1 | + | 26397 | 0.7 | 0.462279 |
Target: 5'- gCGAGCAGGCcgccagaGAGGCUGCug-CGCAGg -3' miRNA: 3'- -GUUUGUCCGc------UUCCGGCGuugGCGUC- -5' |
|||||||
22592 | 3' | -55.3 | NC_005091.1 | + | 11384 | 0.7 | 0.442449 |
Target: 5'- ---cCGGGCGucGGCCGCGucacGCUGCGc -3' miRNA: 3'- guuuGUCCGCuuCCGGCGU----UGGCGUc -5' |
|||||||
22592 | 3' | -55.3 | NC_005091.1 | + | 42305 | 0.71 | 0.413631 |
Target: 5'- gCAGGCAGGCGAaaggaauuacAGGCCGCcguugucgUCGUAGc -3' miRNA: 3'- -GUUUGUCCGCU----------UCCGGCGuu------GGCGUC- -5' |
|||||||
22592 | 3' | -55.3 | NC_005091.1 | + | 29619 | 0.71 | 0.404285 |
Target: 5'- --uGCGGGCGAgcgggaGGGCCGUAcGCUGCGc -3' miRNA: 3'- guuUGUCCGCU------UCCGGCGU-UGGCGUc -5' |
|||||||
22592 | 3' | -55.3 | NC_005091.1 | + | 23892 | 0.72 | 0.37795 |
Target: 5'- gGAAgAGGCGAaccagaaaaucaAGGCCGCGuacacggagagcggcCCGCAGa -3' miRNA: 3'- gUUUgUCCGCU------------UCCGGCGUu--------------GGCGUC- -5' |
|||||||
22592 | 3' | -55.3 | NC_005091.1 | + | 15407 | 0.72 | 0.368267 |
Target: 5'- aCGGGCAGGCGAucacauGGUCGgcAUCGCAGg -3' miRNA: 3'- -GUUUGUCCGCUu-----CCGGCguUGGCGUC- -5' |
|||||||
22592 | 3' | -55.3 | NC_005091.1 | + | 42495 | 0.72 | 0.342735 |
Target: 5'- aCGAGCcgaucGGCGAAGGCCGCAucaGCGa -3' miRNA: 3'- -GUUUGu----CCGCUUCCGGCGUuggCGUc -5' |
|||||||
22592 | 3' | -55.3 | NC_005091.1 | + | 44288 | 0.73 | 0.326436 |
Target: 5'- --cGCAGGCGAAGacGCCGCAuACgGCAc -3' miRNA: 3'- guuUGUCCGCUUC--CGGCGU-UGgCGUc -5' |
|||||||
22592 | 3' | -55.3 | NC_005091.1 | + | 52790 | 0.73 | 0.318505 |
Target: 5'- gGGACGcggcGGCGAucAGGCCGCAcGCgGCAGc -3' miRNA: 3'- gUUUGU----CCGCU--UCCGGCGU-UGgCGUC- -5' |
|||||||
22592 | 3' | -55.3 | NC_005091.1 | + | 26391 | 0.73 | 0.295584 |
Target: 5'- gCAuuCAGGCGGucugcuGCgGCAGCCGCAGc -3' miRNA: 3'- -GUuuGUCCGCUuc----CGgCGUUGGCGUC- -5' |
|||||||
22592 | 3' | -55.3 | NC_005091.1 | + | 26500 | 0.73 | 0.295584 |
Target: 5'- -cAACAGGCGcaggcaacgcAGGCUGCGgcuGCCGCAGc -3' miRNA: 3'- guUUGUCCGCu---------UCCGGCGU---UGGCGUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home