miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22592 5' -60.7 NC_005091.1 + 11308 0.66 0.443053
Target:  5'- gGUCUCGuGCaAAAGUGG--GCCUCCCcCg -3'
miRNA:   3'- -CAGAGC-CG-UUUCGCCggCGGAGGGaG- -5'
22592 5' -60.7 NC_005091.1 + 19112 0.66 0.415153
Target:  5'- ---aCGGCAAAGC-GCCGCaugaaUCCCg- -3'
miRNA:   3'- cagaGCCGUUUCGcCGGCGg----AGGGag -5'
22592 5' -60.7 NC_005091.1 + 27333 0.66 0.415153
Target:  5'- aUCUCGGacu-GCGGCgcgaCGCCagCCUCu -3'
miRNA:   3'- cAGAGCCguuuCGCCG----GCGGagGGAG- -5'
22592 5' -60.7 NC_005091.1 + 46434 0.67 0.379682
Target:  5'- -cUUCGGCGGuuuuuuCGGCgGCUUCCUUCg -3'
miRNA:   3'- caGAGCCGUUuc----GCCGgCGGAGGGAG- -5'
22592 5' -60.7 NC_005091.1 + 14265 0.68 0.338288
Target:  5'- uGUCgUCGGC-GAGCGGCCaguaCCUCCg-- -3'
miRNA:   3'- -CAG-AGCCGuUUCGCCGGc---GGAGGgag -5'
22592 5' -60.7 NC_005091.1 + 2304 0.68 0.307604
Target:  5'- -gCUUGGCGucuuccacgucGAGCgucaGGCCGCgUCCCUUc -3'
miRNA:   3'- caGAGCCGU-----------UUCG----CCGGCGgAGGGAG- -5'
22592 5' -60.7 NC_005091.1 + 9414 0.7 0.252726
Target:  5'- -aCUCGcCAucGCGGCUGCCggCCUCg -3'
miRNA:   3'- caGAGCcGUuuCGCCGGCGGagGGAG- -5'
22592 5' -60.7 NC_005091.1 + 54990 0.71 0.200893
Target:  5'- cGUC-CGGCcGGGCGGcCCGCCgguaUCCCg- -3'
miRNA:   3'- -CAGaGCCGuUUCGCC-GGCGG----AGGGag -5'
22592 5' -60.7 NC_005091.1 + 7178 0.73 0.138674
Target:  5'- cGUCUugcCGGCAGcGGCGGCCGUCUcgaugCCCUUc -3'
miRNA:   3'- -CAGA---GCCGUU-UCGCCGGCGGA-----GGGAG- -5'
22592 5' -60.7 NC_005091.1 + 44294 0.74 0.127868
Target:  5'- -aCUCGGgGAaaauaccgAGUGGCCGCCUUgCUCg -3'
miRNA:   3'- caGAGCCgUU--------UCGCCGGCGGAGgGAG- -5'
22592 5' -60.7 NC_005091.1 + 10571 0.75 0.102755
Target:  5'- uUC-CGGCAgcGCGGCCGCCucuUCCCa- -3'
miRNA:   3'- cAGaGCCGUuuCGCCGGCGG---AGGGag -5'
22592 5' -60.7 NC_005091.1 + 26962 1.08 0.000305
Target:  5'- aGUCUCGGCAAAGCGGCCGCCUCCCUCu -3'
miRNA:   3'- -CAGAGCCGUUUCGCCGGCGGAGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.