miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22593 3' -52.8 NC_005091.1 + 6539 0.66 0.853941
Target:  5'- cCUCA--AUCCGCGCUuuuGGGGCAg--- -3'
miRNA:   3'- -GAGUagUAGGCGCGGu--UCCUGUacag -5'
22593 3' -52.8 NC_005091.1 + 25694 0.66 0.835405
Target:  5'- -gCcgCAUUCGCGCUuuucgcgAAGGGCAUGa- -3'
miRNA:   3'- gaGuaGUAGGCGCGG-------UUCCUGUACag -5'
22593 3' -52.8 NC_005091.1 + 28308 0.66 0.817788
Target:  5'- aUCAUCGUCa-CGCCGGGcGCAUGg- -3'
miRNA:   3'- gAGUAGUAGgcGCGGUUCcUGUACag -5'
22593 3' -52.8 NC_005091.1 + 2015 0.66 0.817788
Target:  5'- -gCAUCGUCgCGUucgaucuucucGCCGAGGACcuucaacgcgauAUGUCg -3'
miRNA:   3'- gaGUAGUAG-GCG-----------CGGUUCCUG------------UACAG- -5'
22593 3' -52.8 NC_005091.1 + 16875 0.67 0.788507
Target:  5'- gUCGUCA-CCG-GCCGAGGGCGa--- -3'
miRNA:   3'- gAGUAGUaGGCgCGGUUCCUGUacag -5'
22593 3' -52.8 NC_005091.1 + 44055 0.67 0.778393
Target:  5'- gCUCAcCccgauUCCGCGCCAAggaggcacgauGGACGUGg- -3'
miRNA:   3'- -GAGUaGu----AGGCGCGGUU-----------CCUGUACag -5'
22593 3' -52.8 NC_005091.1 + 32960 0.67 0.778393
Target:  5'- aUCAUCAUCCGCGa-GAGcGGCGUugaGUUg -3'
miRNA:   3'- gAGUAGUAGGCGCggUUC-CUGUA---CAG- -5'
22593 3' -52.8 NC_005091.1 + 40457 0.68 0.736478
Target:  5'- uUCAccgaGUCgUGCGCCucuuggcGGGACAUGUCg -3'
miRNA:   3'- gAGUag--UAG-GCGCGGu------UCCUGUACAG- -5'
22593 3' -52.8 NC_005091.1 + 12975 0.69 0.670568
Target:  5'- --gGUCGUCCGgGCCGAGcGGCGUa-- -3'
miRNA:   3'- gagUAGUAGGCgCGGUUC-CUGUAcag -5'
22593 3' -52.8 NC_005091.1 + 34644 0.7 0.62459
Target:  5'- uUCcUCggUCGCGCCGGGGAUgacguugAUGUCg -3'
miRNA:   3'- gAGuAGuaGGCGCGGUUCCUG-------UACAG- -5'
22593 3' -52.8 NC_005091.1 + 23365 0.7 0.614487
Target:  5'- --aGUCGUCgGUcaGCCGGGcGGCAUGUCg -3'
miRNA:   3'- gagUAGUAGgCG--CGGUUC-CUGUACAG- -5'
22593 3' -52.8 NC_005091.1 + 26990 0.7 0.592094
Target:  5'- uUCAUCGcCUGCGCC---GACAUGUCc -3'
miRNA:   3'- gAGUAGUaGGCGCGGuucCUGUACAG- -5'
22593 3' -52.8 NC_005091.1 + 34358 0.71 0.536878
Target:  5'- gCUUGUCGUacugcacgCCGCGUCGAagcguGGGCGUGUCg -3'
miRNA:   3'- -GAGUAGUA--------GGCGCGGUU-----CCUGUACAG- -5'
22593 3' -52.8 NC_005091.1 + 44766 0.74 0.41353
Target:  5'- aUCcUgAUCCGCGUCAAGGACGaaaaGUCg -3'
miRNA:   3'- gAGuAgUAGGCGCGGUUCCUGUa---CAG- -5'
22593 3' -52.8 NC_005091.1 + 10702 0.75 0.358733
Target:  5'- -gCGUCGUagaCCGgGuCCGGGGGCAUGUCg -3'
miRNA:   3'- gaGUAGUA---GGCgC-GGUUCCUGUACAG- -5'
22593 3' -52.8 NC_005091.1 + 39257 0.77 0.265095
Target:  5'- uCUCGUCuUCCGCGCgGaucAGGACAUGg- -3'
miRNA:   3'- -GAGUAGuAGGCGCGgU---UCCUGUACag -5'
22593 3' -52.8 NC_005091.1 + 27089 1.11 0.001303
Target:  5'- cCUCAUCAUCCGCGCCAAGGACAUGUCg -3'
miRNA:   3'- -GAGUAGUAGGCGCGGUUCCUGUACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.