miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22593 5' -50.5 NC_005091.1 + 51150 0.66 0.932817
Target:  5'- --cAGcGACGCGc----GGCGAUUGACg -3'
miRNA:   3'- acuUC-CUGCGCuucuuCCGCUAACUG- -5'
22593 5' -50.5 NC_005091.1 + 37435 0.66 0.932817
Target:  5'- cGGAGGAaGUGgcGAcGGCGAg-GACg -3'
miRNA:   3'- aCUUCCUgCGCuuCUuCCGCUaaCUG- -5'
22593 5' -50.5 NC_005091.1 + 18854 0.66 0.923451
Target:  5'- gGAuGGGACGgcccggucuucuaucCGGAGAAGGCGAcgauccagaUGGCg -3'
miRNA:   3'- aCU-UCCUGC---------------GCUUCUUCCGCUa--------ACUG- -5'
22593 5' -50.5 NC_005091.1 + 10734 0.67 0.907985
Target:  5'- aUGAAGGA-GUGGcGGGAGGCGAUcaaGAa -3'
miRNA:   3'- -ACUUCCUgCGCU-UCUUCCGCUAa--CUg -5'
22593 5' -50.5 NC_005091.1 + 23243 0.67 0.907985
Target:  5'- aGAAGG--GCGAGGAAGuacucGCGAagGACa -3'
miRNA:   3'- aCUUCCugCGCUUCUUC-----CGCUaaCUG- -5'
22593 5' -50.5 NC_005091.1 + 44629 0.67 0.877713
Target:  5'- cGAAGaaGACGCGGGcggcgacGAAGGCGAc-GGCa -3'
miRNA:   3'- aCUUC--CUGCGCUU-------CUUCCGCUaaCUG- -5'
22593 5' -50.5 NC_005091.1 + 58030 0.68 0.870444
Target:  5'- gGucGGAugcuCGCGGAGGAuauGGCGGUaGACg -3'
miRNA:   3'- aCuuCCU----GCGCUUCUU---CCGCUAaCUG- -5'
22593 5' -50.5 NC_005091.1 + 55049 0.68 0.870444
Target:  5'- cGAGGGGCGCaGAaaacGGGAcagccgcgcGGCGcUUGGCg -3'
miRNA:   3'- aCUUCCUGCG-CU----UCUU---------CCGCuAACUG- -5'
22593 5' -50.5 NC_005091.1 + 636 0.68 0.870444
Target:  5'- gGucGGAugcuCGCGGAGGAuauGGCGGUaGACg -3'
miRNA:   3'- aCuuCCU----GCGCUUCUU---CCGCUAaCUG- -5'
22593 5' -50.5 NC_005091.1 + 34058 0.68 0.85353
Target:  5'- ---uGGACGCGcuGAAGGCGuacgucGGCg -3'
miRNA:   3'- acuuCCUGCGCuuCUUCCGCuaa---CUG- -5'
22593 5' -50.5 NC_005091.1 + 44903 0.68 0.835624
Target:  5'- cGGAGGcaauCGCgGAAGcAGGCGGUacgGGCg -3'
miRNA:   3'- aCUUCCu---GCG-CUUCuUCCGCUAa--CUG- -5'
22593 5' -50.5 NC_005091.1 + 37231 0.7 0.766316
Target:  5'- cGccGGGCGCGuacguGGGCGAUUGGu -3'
miRNA:   3'- aCuuCCUGCGCuucu-UCCGCUAACUg -5'
22593 5' -50.5 NC_005091.1 + 51590 0.7 0.734155
Target:  5'- gUGAcGGGCGCGcAGAAGcGCGGcacgGGCg -3'
miRNA:   3'- -ACUuCCUGCGCuUCUUC-CGCUaa--CUG- -5'
22593 5' -50.5 NC_005091.1 + 36428 0.74 0.542821
Target:  5'- cUGAAGGACgGCGAGucgauGAcGGCGGaUGACa -3'
miRNA:   3'- -ACUUCCUG-CGCUU-----CUuCCGCUaACUG- -5'
22593 5' -50.5 NC_005091.1 + 27052 1.12 0.002113
Target:  5'- aUGAAGGACGCGAAGAAGGCGAUUGACg -3'
miRNA:   3'- -ACUUCCUGCGCUUCUUCCGCUAACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.