miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22595 3' -57 NC_005091.1 + 9284 0.66 0.684531
Target:  5'- gCGCGAUUCgGGUcgccggcugcaCGGCGAcGcAGGCUCa -3'
miRNA:   3'- -GUGCUAGGgCCA-----------GCCGCUuC-UCUGGG- -5'
22595 3' -57 NC_005091.1 + 37217 0.66 0.683474
Target:  5'- gGCG-UUCCGGcggccggaagaugUCGGCGAGGucgauGACCa -3'
miRNA:   3'- gUGCuAGGGCC-------------AGCCGCUUCu----CUGGg -5'
22595 3' -57 NC_005091.1 + 43647 0.66 0.66332
Target:  5'- aGCGAgaaaugCCCGGaccuucacgaaaUCGGCGAAGcGAagcagcucuuCCCg -3'
miRNA:   3'- gUGCUa-----GGGCC------------AGCCGCUUCuCU----------GGG- -5'
22595 3' -57 NC_005091.1 + 44199 0.66 0.66332
Target:  5'- gCACGGUCgagcaGGUCGcCGAAGGGAagaCCg -3'
miRNA:   3'- -GUGCUAGgg---CCAGCcGCUUCUCUg--GG- -5'
22595 3' -57 NC_005091.1 + 7052 0.66 0.652668
Target:  5'- gAUGAcgCgCgGGUCGGCGuuguAGAGcaGCCCg -3'
miRNA:   3'- gUGCUa-G-GgCCAGCCGCu---UCUC--UGGG- -5'
22595 3' -57 NC_005091.1 + 17912 0.66 0.651602
Target:  5'- uCACGAUacgucgcCUCGGUCGuGCGGuAGAcGGCCg -3'
miRNA:   3'- -GUGCUA-------GGGCCAGC-CGCU-UCU-CUGGg -5'
22595 3' -57 NC_005091.1 + 55068 0.67 0.620643
Target:  5'- gGCGGgccgCCCGGcCGGaCGAGG-GGCgCa -3'
miRNA:   3'- gUGCUa---GGGCCaGCC-GCUUCuCUGgG- -5'
22595 3' -57 NC_005091.1 + 35856 0.67 0.599325
Target:  5'- uGCGAUUCCGG-CGGCcggGAAG-GugUCa -3'
miRNA:   3'- gUGCUAGGGCCaGCCG---CUUCuCugGG- -5'
22595 3' -57 NC_005091.1 + 16793 0.67 0.588702
Target:  5'- aGCGAUCgcccUCGGcCGGUGAcgacggAGGGACCg -3'
miRNA:   3'- gUGCUAG----GGCCaGCCGCU------UCUCUGGg -5'
22595 3' -57 NC_005091.1 + 55581 0.68 0.582344
Target:  5'- gCGCGGUCCacgcgcucgugcaggCGGcgaUCGGCGAAGuGAUgCg -3'
miRNA:   3'- -GUGCUAGG---------------GCC---AGCCGCUUCuCUGgG- -5'
22595 3' -57 NC_005091.1 + 30580 0.68 0.557068
Target:  5'- aAC-AUCCgGGUCGGCac-GAGACCg -3'
miRNA:   3'- gUGcUAGGgCCAGCCGcuuCUCUGGg -5'
22595 3' -57 NC_005091.1 + 39814 0.68 0.557068
Target:  5'- uGCGAaguuugucucUCCCGGUCaGCGuGGuGugCCc -3'
miRNA:   3'- gUGCU----------AGGGCCAGcCGCuUCuCugGG- -5'
22595 3' -57 NC_005091.1 + 8518 0.68 0.536248
Target:  5'- -uCGAgcaUCCGGgcugCGGCccGGAGACCCu -3'
miRNA:   3'- guGCUa--GGGCCa---GCCGcuUCUCUGGG- -5'
22595 3' -57 NC_005091.1 + 32207 0.69 0.499505
Target:  5'- gGCGAUggacuccagcagcaaCCCGGagUCGGCGc--GGACCCg -3'
miRNA:   3'- gUGCUA---------------GGGCC--AGCCGCuucUCUGGG- -5'
22595 3' -57 NC_005091.1 + 15162 0.7 0.446633
Target:  5'- -uUGcgCCCGGaUCGGgGAcGAGACCg -3'
miRNA:   3'- guGCuaGGGCC-AGCCgCUuCUCUGGg -5'
22595 3' -57 NC_005091.1 + 29609 0.7 0.427852
Target:  5'- -cCGAUCUCGGUgCgGGCGAgcgGGAGGgCCg -3'
miRNA:   3'- guGCUAGGGCCA-G-CCGCU---UCUCUgGG- -5'
22595 3' -57 NC_005091.1 + 8115 0.73 0.295954
Target:  5'- uGCGA-CCCaGUgGGCGAAGGaGCCCg -3'
miRNA:   3'- gUGCUaGGGcCAgCCGCUUCUcUGGG- -5'
22595 3' -57 NC_005091.1 + 55885 0.75 0.213299
Target:  5'- cCAUGAUCCCGGUCgcacgauGGCGcAGcAGGCCg -3'
miRNA:   3'- -GUGCUAGGGCCAG-------CCGCuUC-UCUGGg -5'
22595 3' -57 NC_005091.1 + 15040 0.83 0.068621
Target:  5'- gACGAUaCCCGGaUCGGgGAcGAGACCCg -3'
miRNA:   3'- gUGCUA-GGGCC-AGCCgCUuCUCUGGG- -5'
22595 3' -57 NC_005091.1 + 14921 0.83 0.068621
Target:  5'- gACGAUaCCCGGaUCGGgGAcGAGACCCg -3'
miRNA:   3'- gUGCUA-GGGCC-AGCCgCUuCUCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.