miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22596 3' -52.8 NC_005091.1 + 7417 0.66 0.876139
Target:  5'- gGUCGagcuGCCcGAAGAAcCGGCUGCcgCUg -3'
miRNA:   3'- gUAGC----UGGaCUUCUU-GCCGGCGaaGG- -5'
22596 3' -52.8 NC_005091.1 + 11868 0.66 0.876139
Target:  5'- --gCGGCaUGAAcGGAUGGUCGCUgaaaUCCg -3'
miRNA:   3'- guaGCUGgACUU-CUUGCCGGCGA----AGG- -5'
22596 3' -52.8 NC_005091.1 + 50616 0.66 0.868211
Target:  5'- aCGUCG-CCUGuguuGAcguacgcgGCGGCCGgUUCg -3'
miRNA:   3'- -GUAGCuGGACuu--CU--------UGCCGGCgAAGg -5'
22596 3' -52.8 NC_005091.1 + 10425 0.66 0.868211
Target:  5'- --cUGACCgu--GAGCGGCCGCa--- -3'
miRNA:   3'- guaGCUGGacuuCUUGCCGGCGaagg -5'
22596 3' -52.8 NC_005091.1 + 18870 0.66 0.868211
Target:  5'- gCGUCGAUCgauucaagGAuGGGACGGCCcgguCUUCUa -3'
miRNA:   3'- -GUAGCUGGa-------CU-UCUUGCCGGc---GAAGG- -5'
22596 3' -52.8 NC_005091.1 + 40152 0.66 0.868211
Target:  5'- cUAUCGcacgggaaauCCUGAAGuACGGCCuaUUCa -3'
miRNA:   3'- -GUAGCu---------GGACUUCuUGCCGGcgAAGg -5'
22596 3' -52.8 NC_005091.1 + 52874 0.66 0.868211
Target:  5'- gCGUgCGGCCUGAuc-GCcGCCGCgUCCc -3'
miRNA:   3'- -GUA-GCUGGACUucuUGcCGGCGaAGG- -5'
22596 3' -52.8 NC_005091.1 + 507 0.66 0.863333
Target:  5'- -cUCGACCUGcgccgucgcgugcguGAGAACcGCgCGCUcUCCc -3'
miRNA:   3'- guAGCUGGAC---------------UUCUUGcCG-GCGA-AGG- -5'
22596 3' -52.8 NC_005091.1 + 57901 0.66 0.863333
Target:  5'- -cUCGACCUGcgccgucgcgugcguGAGAACcGCgCGCUcUCCc -3'
miRNA:   3'- guAGCUGGAC---------------UUCUUGcCG-GCGA-AGG- -5'
22596 3' -52.8 NC_005091.1 + 14271 0.66 0.860033
Target:  5'- cCGUUGACCgGAGGAcugacguucacGCGuGCcCGCgUUCCc -3'
miRNA:   3'- -GUAGCUGGaCUUCU-----------UGC-CG-GCG-AAGG- -5'
22596 3' -52.8 NC_005091.1 + 16970 0.67 0.833181
Target:  5'- gCGUCGGgCUGggGGacgaccacgaACGGCUcgcugcaGCUUCUc -3'
miRNA:   3'- -GUAGCUgGACuuCU----------UGCCGG-------CGAAGG- -5'
22596 3' -52.8 NC_005091.1 + 14604 0.67 0.824987
Target:  5'- cCGUCGcCCcGGcaucGAGCGGCaCGCUUaCCg -3'
miRNA:   3'- -GUAGCuGGaCUu---CUUGCCG-GCGAA-GG- -5'
22596 3' -52.8 NC_005091.1 + 4171 0.67 0.815686
Target:  5'- gGUCGGCUgGGAG-AUGGCCGagcggaugUCCa -3'
miRNA:   3'- gUAGCUGGaCUUCuUGCCGGCga------AGG- -5'
22596 3' -52.8 NC_005091.1 + 10871 0.67 0.812858
Target:  5'- gAUCGACCUcGGGAaacagcucgacccgGCGGCCGg--CCu -3'
miRNA:   3'- gUAGCUGGAcUUCU--------------UGCCGGCgaaGG- -5'
22596 3' -52.8 NC_005091.1 + 28076 0.67 0.80619
Target:  5'- gCAUcCGGCUUGAcuuGGaAGCGGCCGUUcUUCa -3'
miRNA:   3'- -GUA-GCUGGACU---UC-UUGCCGGCGA-AGG- -5'
22596 3' -52.8 NC_005091.1 + 45967 0.67 0.80619
Target:  5'- uGUCGagcggcgacuGCUUGuAGAgccacucguACGGCCGCUUCg -3'
miRNA:   3'- gUAGC----------UGGACuUCU---------UGCCGGCGAAGg -5'
22596 3' -52.8 NC_005091.1 + 3483 0.67 0.796509
Target:  5'- aCAUCGACCaGAuGGucgucucguuCGGCuCGCUUCa -3'
miRNA:   3'- -GUAGCUGGaCUuCUu---------GCCG-GCGAAGg -5'
22596 3' -52.8 NC_005091.1 + 25227 0.67 0.796509
Target:  5'- gGUCgGugCguccGGGGCGGCCGCUgcaCCg -3'
miRNA:   3'- gUAG-CugGacu-UCUUGCCGGCGAa--GG- -5'
22596 3' -52.8 NC_005091.1 + 21722 0.67 0.796509
Target:  5'- --gCGACgUucGAAcGAACGGCCGCccgCCg -3'
miRNA:   3'- guaGCUGgA--CUU-CUUGCCGGCGaa-GG- -5'
22596 3' -52.8 NC_005091.1 + 47159 0.67 0.796509
Target:  5'- cCAUCauGugCUGAAGAACGucuuGCCGUccgacUCCg -3'
miRNA:   3'- -GUAG--CugGACUUCUUGC----CGGCGa----AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.