miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22596 3' -52.8 NC_005091.1 + 18280 0.69 0.691989
Target:  5'- --gCGACCUGAAgucGAACGGCaCGCcgUUg -3'
miRNA:   3'- guaGCUGGACUU---CUUGCCG-GCGa-AGg -5'
22596 3' -52.8 NC_005091.1 + 18870 0.66 0.868211
Target:  5'- gCGUCGAUCgauucaagGAuGGGACGGCCcgguCUUCUa -3'
miRNA:   3'- -GUAGCUGGa-------CU-UCUUGCCGGc---GAAGG- -5'
22596 3' -52.8 NC_005091.1 + 40152 0.66 0.868211
Target:  5'- cUAUCGcacgggaaauCCUGAAGuACGGCCuaUUCa -3'
miRNA:   3'- -GUAGCu---------GGACUUCuUGCCGGcgAAGg -5'
22596 3' -52.8 NC_005091.1 + 25227 0.67 0.796509
Target:  5'- gGUCgGugCguccGGGGCGGCCGCUgcaCCg -3'
miRNA:   3'- gUAG-CugGacu-UCUUGCCGGCGAa--GG- -5'
22596 3' -52.8 NC_005091.1 + 47159 0.67 0.796509
Target:  5'- cCAUCauGugCUGAAGAACGucuuGCCGUccgacUCCg -3'
miRNA:   3'- -GUAG--CugGACUUCUUGC----CGGCGa----AGG- -5'
22596 3' -52.8 NC_005091.1 + 52874 0.66 0.868211
Target:  5'- gCGUgCGGCCUGAuc-GCcGCCGCgUCCc -3'
miRNA:   3'- -GUA-GCUGGACUucuUGcCGGCGaAGG- -5'
22596 3' -52.8 NC_005091.1 + 14604 0.67 0.824987
Target:  5'- cCGUCGcCCcGGcaucGAGCGGCaCGCUUaCCg -3'
miRNA:   3'- -GUAGCuGGaCUu---CUUGCCG-GCGAA-GG- -5'
22596 3' -52.8 NC_005091.1 + 21722 0.67 0.796509
Target:  5'- --gCGACgUucGAAcGAACGGCCGCccgCCg -3'
miRNA:   3'- guaGCUGgA--CUU-CUUGCCGGCGaa-GG- -5'
22596 3' -52.8 NC_005091.1 + 9046 0.69 0.713735
Target:  5'- -cUCG-CCggGAAGuAACGGCCGUUUgCg -3'
miRNA:   3'- guAGCuGGa-CUUC-UUGCCGGCGAAgG- -5'
22596 3' -52.8 NC_005091.1 + 28176 1.13 0.001045
Target:  5'- aCAUCGACCUGAAGAACGGCCGCUUCCa -3'
miRNA:   3'- -GUAGCUGGACUUCUUGCCGGCGAAGG- -5'
22596 3' -52.8 NC_005091.1 + 57901 0.66 0.863333
Target:  5'- -cUCGACCUGcgccgucgcgugcguGAGAACcGCgCGCUcUCCc -3'
miRNA:   3'- guAGCUGGAC---------------UUCUUGcCG-GCGA-AGG- -5'
22596 3' -52.8 NC_005091.1 + 507 0.66 0.863333
Target:  5'- -cUCGACCUGcgccgucgcgugcguGAGAACcGCgCGCUcUCCc -3'
miRNA:   3'- guAGCUGGAC---------------UUCUUGcCG-GCGA-AGG- -5'
22596 3' -52.8 NC_005091.1 + 5319 0.68 0.75615
Target:  5'- cCGUgCGGCCagUGAugugauccGGGGCGGCCGUUgcacUCCu -3'
miRNA:   3'- -GUA-GCUGG--ACU--------UCUUGCCGGCGA----AGG- -5'
22596 3' -52.8 NC_005091.1 + 24905 0.69 0.72449
Target:  5'- ---aGACgCUGAAGAACGGCUuccucgGCggCCu -3'
miRNA:   3'- guagCUG-GACUUCUUGCCGG------CGaaGG- -5'
22596 3' -52.8 NC_005091.1 + 16970 0.67 0.833181
Target:  5'- gCGUCGGgCUGggGGacgaccacgaACGGCUcgcugcaGCUUCUc -3'
miRNA:   3'- -GUAGCUgGACuuCU----------UGCCGG-------CGAAGG- -5'
22596 3' -52.8 NC_005091.1 + 50238 0.83 0.118752
Target:  5'- -uUCGGCCgcgugaugaUGAAGGGCGGCCGgUUCCa -3'
miRNA:   3'- guAGCUGG---------ACUUCUUGCCGGCgAAGG- -5'
22596 3' -52.8 NC_005091.1 + 45967 0.67 0.80619
Target:  5'- uGUCGagcggcgacuGCUUGuAGAgccacucguACGGCCGCUUCg -3'
miRNA:   3'- gUAGC----------UGGACuUCU---------UGCCGGCGAAGg -5'
22596 3' -52.8 NC_005091.1 + 35806 0.68 0.766462
Target:  5'- --cCGGCagcuucgcGAAGAaggucugcACGGCCGUUUCCa -3'
miRNA:   3'- guaGCUGga------CUUCU--------UGCCGGCGAAGG- -5'
22596 3' -52.8 NC_005091.1 + 23281 0.72 0.547645
Target:  5'- aGUCGGCCUGAAGGcugaugaACaGGCgGCgaUCCu -3'
miRNA:   3'- gUAGCUGGACUUCU-------UG-CCGgCGa-AGG- -5'
22596 3' -52.8 NC_005091.1 + 57084 0.67 0.784661
Target:  5'- -cUCGACCggcaaGAAGAcaacauugcggccgaGCGGCUguauaucgaacgccaGCUUCCg -3'
miRNA:   3'- guAGCUGGa----CUUCU---------------UGCCGG---------------CGAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.