miRNA display CGI


Results 1 - 20 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22596 5' -55.4 NC_005091.1 + 28142 1.12 0.000701
Target:  5'- gCCGGAUGCAGCCGACAUCACCGACACg -3'
miRNA:   3'- -GGCCUACGUCGGCUGUAGUGGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 31288 0.77 0.181995
Target:  5'- gCCGGcgaGCAGCCGAuCAUCGgCGGCAUg -3'
miRNA:   3'- -GGCCua-CGUCGGCU-GUAGUgGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 23381 0.75 0.262241
Target:  5'- gCCGGG-GCAGCCGACGcagCGCCGcCGa -3'
miRNA:   3'- -GGCCUaCGUCGGCUGUa--GUGGCuGUg -5'
22596 5' -55.4 NC_005091.1 + 34878 0.74 0.281394
Target:  5'- gCCGGAUGCccucaucaacccGCUGAagcggAUCGCCGACGCg -3'
miRNA:   3'- -GGCCUACGu-----------CGGCUg----UAGUGGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 11529 0.74 0.307627
Target:  5'- gCCGGAUcgucaaggcgaaagcGuCGGCCGACGUgGCCGcCGCg -3'
miRNA:   3'- -GGCCUA---------------C-GUCGGCUGUAgUGGCuGUG- -5'
22596 5' -55.4 NC_005091.1 + 13888 0.73 0.33892
Target:  5'- gCCGacGAUGCAGCCGucgucugguugaaccGCAgcuugUACCGGCGCg -3'
miRNA:   3'- -GGC--CUACGUCGGC---------------UGUa----GUGGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 23964 0.73 0.343808
Target:  5'- gCCGGGccaGUGGCUGAauCGUUGCCGACGCg -3'
miRNA:   3'- -GGCCUa--CGUCGGCU--GUAGUGGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 41959 0.72 0.369006
Target:  5'- uCCGGAUucgcgaggucgaGCAGC--ACGUCGCCGugGCa -3'
miRNA:   3'- -GGCCUA------------CGUCGgcUGUAGUGGCugUG- -5'
22596 5' -55.4 NC_005091.1 + 11467 0.72 0.386494
Target:  5'- uCCGGcUGUAGCCGAaugCGCCGAggauCGCu -3'
miRNA:   3'- -GGCCuACGUCGGCUguaGUGGCU----GUG- -5'
22596 5' -55.4 NC_005091.1 + 38877 0.72 0.413729
Target:  5'- -aGGucucgGCAGCCGGCGUCGCgGugAg -3'
miRNA:   3'- ggCCua---CGUCGGCUGUAGUGgCugUg -5'
22596 5' -55.4 NC_005091.1 + 52106 0.72 0.413729
Target:  5'- gCCGuGAaaagGCGGCCG---UCGCCGGCGCg -3'
miRNA:   3'- -GGC-CUa---CGUCGGCuguAGUGGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 34269 0.71 0.423067
Target:  5'- aCCGGAU-CAGUcgcgCGGCAUUGCCGAUAUc -3'
miRNA:   3'- -GGCCUAcGUCG----GCUGUAGUGGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 31955 0.71 0.442115
Target:  5'- cCCGGAacagcucuaUGCgggcgaAGCCGAUAUCGugaCGACGCg -3'
miRNA:   3'- -GGCCU---------ACG------UCGGCUGUAGUg--GCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 25200 0.71 0.450843
Target:  5'- aCCGGGgucgaUGCAGCCGGCgcGUCGauggcgaccgccuCCGugGCc -3'
miRNA:   3'- -GGCCU-----ACGUCGGCUG--UAGU-------------GGCugUG- -5'
22596 5' -55.4 NC_005091.1 + 26016 0.71 0.461638
Target:  5'- gCGcccUGCAcGCCGACGUaCGCCGugGCg -3'
miRNA:   3'- gGCcu-ACGU-CGGCUGUA-GUGGCugUG- -5'
22596 5' -55.4 NC_005091.1 + 15996 0.7 0.471569
Target:  5'- aCGGuuaCGGCCGGUAUCGCgGACGCg -3'
miRNA:   3'- gGCCuacGUCGGCUGUAGUGgCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 26671 0.7 0.491748
Target:  5'- gCCGGcgGCGGCCGGgAcuucgaacgacUCACCcaGCGCg -3'
miRNA:   3'- -GGCCuaCGUCGGCUgU-----------AGUGGc-UGUG- -5'
22596 5' -55.4 NC_005091.1 + 25495 0.7 0.501985
Target:  5'- uCCGGAagGCGaucGCCGAUAugggcuUCGCgGACGCg -3'
miRNA:   3'- -GGCCUa-CGU---CGGCUGU------AGUGgCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 32208 0.7 0.512316
Target:  5'- gCGGcgGCAGCgaGCAUCACCuuCGCg -3'
miRNA:   3'- gGCCuaCGUCGgcUGUAGUGGcuGUG- -5'
22596 5' -55.4 NC_005091.1 + 31793 0.7 0.512316
Target:  5'- uUCGGc-GCAGCCGAaggCGgCCGGCGCg -3'
miRNA:   3'- -GGCCuaCGUCGGCUguaGU-GGCUGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.