miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22596 5' -55.4 NC_005091.1 + 56842 0.69 0.543802
Target:  5'- aCCGaGAUGCucGCCGAUA-UACCaGCACg -3'
miRNA:   3'- -GGC-CUACGu-CGGCUGUaGUGGcUGUG- -5'
22596 5' -55.4 NC_005091.1 + 55840 0.68 0.64107
Target:  5'- gCGGc-GCAGCCGGuCAgcaACUGGCGCa -3'
miRNA:   3'- gGCCuaCGUCGGCU-GUag-UGGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 54732 0.66 0.758129
Target:  5'- gCCGGGccaaaGCGGCaCGGCAUgACUGAgAUu -3'
miRNA:   3'- -GGCCUa----CGUCG-GCUGUAgUGGCUgUG- -5'
22596 5' -55.4 NC_005091.1 + 53067 0.66 0.747897
Target:  5'- gCCGGucAUGguGCgGGguUCGCUGAuCGCg -3'
miRNA:   3'- -GGCC--UACguCGgCUguAGUGGCU-GUG- -5'
22596 5' -55.4 NC_005091.1 + 52877 0.68 0.630172
Target:  5'- gCCGcGUGCGGCCug-AUCGCCGcCGCg -3'
miRNA:   3'- -GGCcUACGUCGGcugUAGUGGCuGUG- -5'
22596 5' -55.4 NC_005091.1 + 52181 0.68 0.619277
Target:  5'- gCCGGggGCGucCCGAUgacuuccaaAUgGCCGACACg -3'
miRNA:   3'- -GGCCuaCGUc-GGCUG---------UAgUGGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 52106 0.72 0.413729
Target:  5'- gCCGuGAaaagGCGGCCG---UCGCCGGCGCg -3'
miRNA:   3'- -GGC-CUa---CGUCGGCuguAGUGGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 50381 0.67 0.651959
Target:  5'- gCCGGGUGaucggccgcgAGCCGACgAUgGCUGAgACg -3'
miRNA:   3'- -GGCCUACg---------UCGGCUG-UAgUGGCUgUG- -5'
22596 5' -55.4 NC_005091.1 + 50300 0.66 0.758129
Target:  5'- gUCGGcucGCGGCCGA--UCAcCCGGCAg -3'
miRNA:   3'- -GGCCua-CGUCGGCUguAGU-GGCUGUg -5'
22596 5' -55.4 NC_005091.1 + 46235 0.68 0.630172
Target:  5'- gUCGGAgaCGGCCGACAacuaCGACGCg -3'
miRNA:   3'- -GGCCUacGUCGGCUGUagugGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 46180 0.68 0.619277
Target:  5'- uUGGcGUGCAGCuCGuCuUCGCCGAUAUg -3'
miRNA:   3'- gGCC-UACGUCG-GCuGuAGUGGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 45802 0.68 0.597528
Target:  5'- aUCGGAagagcaGUAGCCGGCGcggCgcgcgGCCGACGCg -3'
miRNA:   3'- -GGCCUa-----CGUCGGCUGUa--G-----UGGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 41959 0.72 0.369006
Target:  5'- uCCGGAUucgcgaggucgaGCAGC--ACGUCGCCGugGCa -3'
miRNA:   3'- -GGCCUA------------CGUCGgcUGUAGUGGCugUG- -5'
22596 5' -55.4 NC_005091.1 + 41958 0.67 0.695235
Target:  5'- gCCGacGUGCGGCCucGACAuUUACuCGGCGCa -3'
miRNA:   3'- -GGCc-UACGUCGG--CUGU-AGUG-GCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 39962 0.68 0.597528
Target:  5'- -aGGAcaUGCAGCCccuucgacGCGUCGCCGAUcuuGCg -3'
miRNA:   3'- ggCCU--ACGUCGGc-------UGUAGUGGCUG---UG- -5'
22596 5' -55.4 NC_005091.1 + 38877 0.72 0.413729
Target:  5'- -aGGucucgGCAGCCGGCGUCGCgGugAg -3'
miRNA:   3'- ggCCua---CGUCGGCUGUAGUGgCugUg -5'
22596 5' -55.4 NC_005091.1 + 34878 0.74 0.281394
Target:  5'- gCCGGAUGCccucaucaacccGCUGAagcggAUCGCCGACGCg -3'
miRNA:   3'- -GGCCUACGu-----------CGGCUg----UAGUGGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 34835 0.66 0.7271
Target:  5'- -----cGCGGCCggGACAUgGCCGACAa -3'
miRNA:   3'- ggccuaCGUCGG--CUGUAgUGGCUGUg -5'
22596 5' -55.4 NC_005091.1 + 34753 0.66 0.716557
Target:  5'- aCCGGcucaacucgAUGC--CCGACAUCAacgucauccCCGGCGCg -3'
miRNA:   3'- -GGCC---------UACGucGGCUGUAGU---------GGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 34269 0.71 0.423067
Target:  5'- aCCGGAU-CAGUcgcgCGGCAUUGCCGAUAUc -3'
miRNA:   3'- -GGCCUAcGUCG----GCUGUAGUGGCUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.