miRNA display CGI


Results 21 - 40 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22596 5' -55.4 NC_005091.1 + 13903 0.66 0.716557
Target:  5'- gCGGgcGCAGCgUGACGgucaGCaCGACGCu -3'
miRNA:   3'- gGCCuaCGUCG-GCUGUag--UG-GCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 34753 0.66 0.716557
Target:  5'- aCCGGcucaacucgAUGC--CCGACAUCAacgucauccCCGGCGCg -3'
miRNA:   3'- -GGCC---------UACGucGGCUGUAGU---------GGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 28327 0.66 0.716557
Target:  5'- gCCGGuUGCA-CCGGaaacCAUCAUCGuCACg -3'
miRNA:   3'- -GGCCuACGUcGGCU----GUAGUGGCuGUG- -5'
22596 5' -55.4 NC_005091.1 + 6720 0.66 0.71019
Target:  5'- uUGGcUGCGGUCGcCGUCGCCaacaagaagcagcccGGCACg -3'
miRNA:   3'- gGCCuACGUCGGCuGUAGUGG---------------CUGUG- -5'
22596 5' -55.4 NC_005091.1 + 31198 0.66 0.705931
Target:  5'- aCGacAUGCcGCCGAUGaucggcugcUCGCCGGCACg -3'
miRNA:   3'- gGCc-UACGuCGGCUGU---------AGUGGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 25138 0.66 0.705931
Target:  5'- cCCGGugcaGCGGCCGcccCGgacgCACCGAC-Cg -3'
miRNA:   3'- -GGCCua--CGUCGGCu--GUa---GUGGCUGuG- -5'
22596 5' -55.4 NC_005091.1 + 24619 0.67 0.662831
Target:  5'- uCCGGcgGCuuGUaCGACAUCGCgGACcCg -3'
miRNA:   3'- -GGCCuaCGu-CG-GCUGUAGUGgCUGuG- -5'
22596 5' -55.4 NC_005091.1 + 22642 0.67 0.684479
Target:  5'- uUCGGcUGaUAGCCGAUAUgACCGcUACg -3'
miRNA:   3'- -GGCCuAC-GUCGGCUGUAgUGGCuGUG- -5'
22596 5' -55.4 NC_005091.1 + 26873 0.67 0.695235
Target:  5'- aUCGGAgagggagGCGGCCG-CuUUGCCGAgACu -3'
miRNA:   3'- -GGCCUa------CGUCGGCuGuAGUGGCUgUG- -5'
22596 5' -55.4 NC_005091.1 + 23230 0.67 0.688788
Target:  5'- gCCGcugugGUAGCgCGGCGcguucgcaaaccagcUCGCCGACGCa -3'
miRNA:   3'- -GGCcua--CGUCG-GCUGU---------------AGUGGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 11383 0.67 0.695235
Target:  5'- uCCGGgcGuCGGCCG-CGUCACgCuGCGCu -3'
miRNA:   3'- -GGCCuaC-GUCGGCuGUAGUG-GcUGUG- -5'
22596 5' -55.4 NC_005091.1 + 8475 0.67 0.695235
Target:  5'- aUGGAUGCAGCCG-CG-CACgGAg-- -3'
miRNA:   3'- gGCCUACGUCGGCuGUaGUGgCUgug -5'
22596 5' -55.4 NC_005091.1 + 50381 0.67 0.651959
Target:  5'- gCCGGGUGaucggccgcgAGCCGACgAUgGCUGAgACg -3'
miRNA:   3'- -GGCCUACg---------UCGGCUG-UAgUGGCUgUG- -5'
22596 5' -55.4 NC_005091.1 + 18429 0.67 0.684479
Target:  5'- gCCGGAcgUGUAGUCGAaaugcggaauUGUCGCCGGguCg -3'
miRNA:   3'- -GGCCU--ACGUCGGCU----------GUAGUGGCUguG- -5'
22596 5' -55.4 NC_005091.1 + 41958 0.67 0.695235
Target:  5'- gCCGacGUGCGGCCucGACAuUUACuCGGCGCa -3'
miRNA:   3'- -GGCc-UACGUCGG--CUGU-AGUG-GCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 16168 0.67 0.684479
Target:  5'- uCCGGGUGCaacGGCCGGCAcuacgaaguaUCuCCGGgAa -3'
miRNA:   3'- -GGCCUACG---UCGGCUGU----------AGuGGCUgUg -5'
22596 5' -55.4 NC_005091.1 + 34107 0.67 0.684479
Target:  5'- uCCGGcgGUucgccgaauGCCGACAUgGuuGGCAUc -3'
miRNA:   3'- -GGCCuaCGu--------CGGCUGUAgUggCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 17225 0.67 0.673674
Target:  5'- -----aGCAGaCCGGCAUUagGCCGAUACg -3'
miRNA:   3'- ggccuaCGUC-GGCUGUAG--UGGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 3346 0.68 0.634532
Target:  5'- gCCGGuGUGCaAGCCGAUcaugcgcggguugaaGUCAUCGAUcgaGCg -3'
miRNA:   3'- -GGCC-UACG-UCGGCUG---------------UAGUGGCUG---UG- -5'
22596 5' -55.4 NC_005091.1 + 19536 0.68 0.586692
Target:  5'- uCCGGuUGCugcgcuuucgGGCCGAgCGcCGCCGACAg -3'
miRNA:   3'- -GGCCuACG----------UCGGCU-GUaGUGGCUGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.