miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22596 5' -55.4 NC_005091.1 + 13903 0.66 0.716557
Target:  5'- gCGGgcGCAGCgUGACGgucaGCaCGACGCu -3'
miRNA:   3'- gGCCuaCGUCG-GCUGUag--UG-GCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 15525 0.66 0.747897
Target:  5'- aCGGGUGCggGGCCGuACAccgaucagguguUCAUCGAUuucGCg -3'
miRNA:   3'- gGCCUACG--UCGGC-UGU------------AGUGGCUG---UG- -5'
22596 5' -55.4 NC_005091.1 + 15996 0.7 0.471569
Target:  5'- aCGGuuaCGGCCGGUAUCGCgGACGCg -3'
miRNA:   3'- gGCCuacGUCGGCUGUAGUGgCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 16074 0.69 0.565141
Target:  5'- aCC-GAUGUAGCCGucGCAUCGCagagCGACAa -3'
miRNA:   3'- -GGcCUACGUCGGC--UGUAGUG----GCUGUg -5'
22596 5' -55.4 NC_005091.1 + 16168 0.67 0.684479
Target:  5'- uCCGGGUGCaacGGCCGGCAcuacgaaguaUCuCCGGgAa -3'
miRNA:   3'- -GGCCUACG---UCGGCUGU----------AGuGGCUgUg -5'
22596 5' -55.4 NC_005091.1 + 17225 0.67 0.673674
Target:  5'- -----aGCAGaCCGGCAUUagGCCGAUACg -3'
miRNA:   3'- ggccuaCGUC-GGCUGUAG--UGGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 17497 0.66 0.737551
Target:  5'- uUCGGuauUGCAGgCGAacgcagCGCCGACGa -3'
miRNA:   3'- -GGCCu--ACGUCgGCUgua---GUGGCUGUg -5'
22596 5' -55.4 NC_005091.1 + 17926 0.68 0.630172
Target:  5'- cUCGGucGUGCGGuaGACG--GCCGGCGCg -3'
miRNA:   3'- -GGCC--UACGUCggCUGUagUGGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 18429 0.67 0.684479
Target:  5'- gCCGGAcgUGUAGUCGAaaugcggaauUGUCGCCGGguCg -3'
miRNA:   3'- -GGCCU--ACGUCGGCU----------GUAGUGGCUguG- -5'
22596 5' -55.4 NC_005091.1 + 18980 0.66 0.75405
Target:  5'- gCCGcGAUGCucggcggaaucguGCCGGCGUU-CCGGgGCg -3'
miRNA:   3'- -GGC-CUACGu------------CGGCUGUAGuGGCUgUG- -5'
22596 5' -55.4 NC_005091.1 + 19536 0.68 0.586692
Target:  5'- uCCGGuUGCugcgcuuucgGGCCGAgCGcCGCCGACAg -3'
miRNA:   3'- -GGCCuACG----------UCGGCU-GUaGUGGCUGUg -5'
22596 5' -55.4 NC_005091.1 + 21635 0.68 0.597528
Target:  5'- aCCGGcggGCGGCCGuucguucgaACGUCGCCccauGCGCc -3'
miRNA:   3'- -GGCCua-CGUCGGC---------UGUAGUGGc---UGUG- -5'
22596 5' -55.4 NC_005091.1 + 22642 0.67 0.684479
Target:  5'- uUCGGcUGaUAGCCGAUAUgACCGcUACg -3'
miRNA:   3'- -GGCCuAC-GUCGGCUGUAgUGGCuGUG- -5'
22596 5' -55.4 NC_005091.1 + 23230 0.67 0.688788
Target:  5'- gCCGcugugGUAGCgCGGCGcguucgcaaaccagcUCGCCGACGCa -3'
miRNA:   3'- -GGCcua--CGUCG-GCUGU---------------AGUGGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 23381 0.75 0.262241
Target:  5'- gCCGGG-GCAGCCGACGcagCGCCGcCGa -3'
miRNA:   3'- -GGCCUaCGUCGGCUGUa--GUGGCuGUg -5'
22596 5' -55.4 NC_005091.1 + 23964 0.73 0.343808
Target:  5'- gCCGGGccaGUGGCUGAauCGUUGCCGACGCg -3'
miRNA:   3'- -GGCCUa--CGUCGGCU--GUAGUGGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 24619 0.67 0.662831
Target:  5'- uCCGGcgGCuuGUaCGACAUCGCgGACcCg -3'
miRNA:   3'- -GGCCuaCGu-CG-GCUGUAGUGgCUGuG- -5'
22596 5' -55.4 NC_005091.1 + 24753 0.66 0.737551
Target:  5'- uCCGuGAUGCccuGCCGAgCuguUCugCGACGu -3'
miRNA:   3'- -GGC-CUACGu--CGGCU-Gu--AGugGCUGUg -5'
22596 5' -55.4 NC_005091.1 + 25099 0.68 0.64107
Target:  5'- aCGGAgGCGGUCGcCAUCgacgcGCCGGCuGCa -3'
miRNA:   3'- gGCCUaCGUCGGCuGUAG-----UGGCUG-UG- -5'
22596 5' -55.4 NC_005091.1 + 25138 0.66 0.705931
Target:  5'- cCCGGugcaGCGGCCGcccCGgacgCACCGAC-Cg -3'
miRNA:   3'- -GGCCua--CGUCGGCu--GUa---GUGGCUGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.