miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22596 5' -55.4 NC_005091.1 + 25099 0.68 0.64107
Target:  5'- aCGGAgGCGGUCGcCAUCgacgcGCCGGCuGCa -3'
miRNA:   3'- gGCCUaCGUCGGCuGUAG-----UGGCUG-UG- -5'
22596 5' -55.4 NC_005091.1 + 55840 0.68 0.64107
Target:  5'- gCGGc-GCAGCCGGuCAgcaACUGGCGCa -3'
miRNA:   3'- gGCCuaCGUCGGCU-GUag-UGGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 46235 0.68 0.630172
Target:  5'- gUCGGAgaCGGCCGACAacuaCGACGCg -3'
miRNA:   3'- -GGCCUacGUCGGCUGUagugGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 17926 0.68 0.630172
Target:  5'- cUCGGucGUGCGGuaGACG--GCCGGCGCg -3'
miRNA:   3'- -GGCC--UACGUCggCUGUagUGGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 10132 0.68 0.619277
Target:  5'- aCGGAcGUuacGCCGGCAcgCGCCGAgCGCc -3'
miRNA:   3'- gGCCUaCGu--CGGCUGUa-GUGGCU-GUG- -5'
22596 5' -55.4 NC_005091.1 + 52181 0.68 0.619277
Target:  5'- gCCGGggGCGucCCGAUgacuuccaaAUgGCCGACACg -3'
miRNA:   3'- -GGCCuaCGUc-GGCUG---------UAgUGGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 32658 0.68 0.619277
Target:  5'- -gGGAuUGCcGUCGACcuugugGUCGCCGGCAUg -3'
miRNA:   3'- ggCCU-ACGuCGGCUG------UAGUGGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 25865 0.68 0.619277
Target:  5'- uCCGGAUGCcgaGGCguuCGGCuugCGCCuGCACg -3'
miRNA:   3'- -GGCCUACG---UCG---GCUGua-GUGGcUGUG- -5'
22596 5' -55.4 NC_005091.1 + 50381 0.67 0.651959
Target:  5'- gCCGGGUGaucggccgcgAGCCGACgAUgGCUGAgACg -3'
miRNA:   3'- -GGCCUACg---------UCGGCUG-UAgUGGCUgUG- -5'
22596 5' -55.4 NC_005091.1 + 18429 0.67 0.684479
Target:  5'- gCCGGAcgUGUAGUCGAaaugcggaauUGUCGCCGGguCg -3'
miRNA:   3'- -GGCCU--ACGUCGGCU----------GUAGUGGCUguG- -5'
22596 5' -55.4 NC_005091.1 + 23230 0.67 0.688788
Target:  5'- gCCGcugugGUAGCgCGGCGcguucgcaaaccagcUCGCCGACGCa -3'
miRNA:   3'- -GGCcua--CGUCG-GCUGU---------------AGUGGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 8475 0.67 0.695235
Target:  5'- aUGGAUGCAGCCG-CG-CACgGAg-- -3'
miRNA:   3'- gGCCUACGUCGGCuGUaGUGgCUgug -5'
22596 5' -55.4 NC_005091.1 + 11383 0.67 0.695235
Target:  5'- uCCGGgcGuCGGCCG-CGUCACgCuGCGCu -3'
miRNA:   3'- -GGCCuaC-GUCGGCuGUAGUG-GcUGUG- -5'
22596 5' -55.4 NC_005091.1 + 26873 0.67 0.695235
Target:  5'- aUCGGAgagggagGCGGCCG-CuUUGCCGAgACu -3'
miRNA:   3'- -GGCCUa------CGUCGGCuGuAGUGGCUgUG- -5'
22596 5' -55.4 NC_005091.1 + 24619 0.67 0.662831
Target:  5'- uCCGGcgGCuuGUaCGACAUCGCgGACcCg -3'
miRNA:   3'- -GGCCuaCGu-CG-GCUGUAGUGgCUGuG- -5'
22596 5' -55.4 NC_005091.1 + 17225 0.67 0.673674
Target:  5'- -----aGCAGaCCGGCAUUagGCCGAUACg -3'
miRNA:   3'- ggccuaCGUC-GGCUGUAG--UGGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 22642 0.67 0.684479
Target:  5'- uUCGGcUGaUAGCCGAUAUgACCGcUACg -3'
miRNA:   3'- -GGCCuAC-GUCGGCUGUAgUGGCuGUG- -5'
22596 5' -55.4 NC_005091.1 + 34107 0.67 0.684479
Target:  5'- uCCGGcgGUucgccgaauGCCGACAUgGuuGGCAUc -3'
miRNA:   3'- -GGCCuaCGu--------CGGCUGUAgUggCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 41958 0.67 0.695235
Target:  5'- gCCGacGUGCGGCCucGACAuUUACuCGGCGCa -3'
miRNA:   3'- -GGCc-UACGUCGG--CUGU-AGUG-GCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 16168 0.67 0.684479
Target:  5'- uCCGGGUGCaacGGCCGGCAcuacgaaguaUCuCCGGgAa -3'
miRNA:   3'- -GGCCUACG---UCGGCUGU----------AGuGGCUgUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.