miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22597 3' -53.4 NC_005091.1 + 19407 0.66 0.868397
Target:  5'- aUCGGCGUCgugcggaaaUUGCCGAgaccuaCGAccGUccaAUCGCu -3'
miRNA:   3'- gAGCCGCAG---------AGCGGCU------GCU--UA---UAGCG- -5'
22597 3' -53.4 NC_005091.1 + 44214 0.66 0.868397
Target:  5'- -gCGGCGUCuUCGCCuGCGu-UGUCu- -3'
miRNA:   3'- gaGCCGCAG-AGCGGcUGCuuAUAGcg -5'
22597 3' -53.4 NC_005091.1 + 19184 0.66 0.860337
Target:  5'- -gCGGCG-CUuugccguggcccCGUCGAUGAAcugGUCGCg -3'
miRNA:   3'- gaGCCGCaGA------------GCGGCUGCUUa--UAGCG- -5'
22597 3' -53.4 NC_005091.1 + 17622 0.66 0.860337
Target:  5'- cCUCGaUGaUCUCGUCGcCGAuaAUCGCg -3'
miRNA:   3'- -GAGCcGC-AGAGCGGCuGCUuaUAGCG- -5'
22597 3' -53.4 NC_005091.1 + 10304 0.66 0.860337
Target:  5'- gCUCGGCG-CUUGUCGuCGuccGUAUgGUa -3'
miRNA:   3'- -GAGCCGCaGAGCGGCuGCu--UAUAgCG- -5'
22597 3' -53.4 NC_005091.1 + 22991 0.66 0.859518
Target:  5'- -aCGGCGUUcUGCCGcagguagguugugAUGAcgGUAUCGCc -3'
miRNA:   3'- gaGCCGCAGaGCGGC-------------UGCU--UAUAGCG- -5'
22597 3' -53.4 NC_005091.1 + 3526 0.66 0.852041
Target:  5'- --aGGCGUCUCGCUGuuccCGAucc-UGCa -3'
miRNA:   3'- gagCCGCAGAGCGGCu---GCUuauaGCG- -5'
22597 3' -53.4 NC_005091.1 + 31858 0.66 0.852041
Target:  5'- gUCGGCGgccugCUCguGCCGugGAAcccggcCGCc -3'
miRNA:   3'- gAGCCGCa----GAG--CGGCugCUUaua---GCG- -5'
22597 3' -53.4 NC_005091.1 + 47637 0.66 0.852041
Target:  5'- -gCGGCGU---GCCGugGAAUccggCGCa -3'
miRNA:   3'- gaGCCGCAgagCGGCugCUUAua--GCG- -5'
22597 3' -53.4 NC_005091.1 + 8801 0.66 0.834774
Target:  5'- aUCGGCGaUCUCGauGuCG-AUAUUGCu -3'
miRNA:   3'- gAGCCGC-AGAGCggCuGCuUAUAGCG- -5'
22597 3' -53.4 NC_005091.1 + 57174 0.67 0.82582
Target:  5'- gCUCGGcCGcaauguugucuUCUUGCCGGuCGAGU-UCGUg -3'
miRNA:   3'- -GAGCC-GC-----------AGAGCGGCU-GCUUAuAGCG- -5'
22597 3' -53.4 NC_005091.1 + 17001 0.67 0.816664
Target:  5'- uCUCGGCGUCUgguggggcuggGCgGACGGAgcGUCGg -3'
miRNA:   3'- -GAGCCGCAGAg----------CGgCUGCUUa-UAGCg -5'
22597 3' -53.4 NC_005091.1 + 31910 0.67 0.816664
Target:  5'- uUCGGUGcCgUUGCCGGCGAG-AUCa- -3'
miRNA:   3'- gAGCCGCaG-AGCGGCUGCUUaUAGcg -5'
22597 3' -53.4 NC_005091.1 + 38118 0.67 0.807317
Target:  5'- uUCGuGCGUCuUCGCCGucuGCGAGcagCGUu -3'
miRNA:   3'- gAGC-CGCAG-AGCGGC---UGCUUauaGCG- -5'
22597 3' -53.4 NC_005091.1 + 2384 0.67 0.788089
Target:  5'- uUCGGCGUCgUCGC-GAUGc--GUCGUg -3'
miRNA:   3'- gAGCCGCAG-AGCGgCUGCuuaUAGCG- -5'
22597 3' -53.4 NC_005091.1 + 33361 0.67 0.778228
Target:  5'- gUC-GCGUCcgUCGCCGAgCGAGcgcuUCGCg -3'
miRNA:   3'- gAGcCGCAG--AGCGGCU-GCUUau--AGCG- -5'
22597 3' -53.4 NC_005091.1 + 1020 0.67 0.778228
Target:  5'- gCUCGGCGUCaauaCGACGGAa--CGCg -3'
miRNA:   3'- -GAGCCGCAGagcgGCUGCUUauaGCG- -5'
22597 3' -53.4 NC_005091.1 + 8849 0.68 0.768218
Target:  5'- uUCGGUGUUggcgcugcugCGCUGGCGAugaacGUCGUa -3'
miRNA:   3'- gAGCCGCAGa---------GCGGCUGCUua---UAGCG- -5'
22597 3' -53.4 NC_005091.1 + 7215 0.68 0.768218
Target:  5'- --gGGCGUcCUCgGCCGGCaGAUGgcggCGCg -3'
miRNA:   3'- gagCCGCA-GAG-CGGCUGcUUAUa---GCG- -5'
22597 3' -53.4 NC_005091.1 + 4862 0.68 0.768218
Target:  5'- -cCGaUGUCUUGCCGACGuuuugCGCg -3'
miRNA:   3'- gaGCcGCAGAGCGGCUGCuuauaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.