miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22597 3' -53.4 NC_005091.1 + 28279 1.13 0.001028
Target:  5'- aCUCGGCGUCUCGCCGACGAAUAUCGCg -3'
miRNA:   3'- -GAGCCGCAGAGCGGCUGCUUAUAGCG- -5'
22597 3' -53.4 NC_005091.1 + 13569 0.77 0.267446
Target:  5'- uCUCGGCGgcgCaccgUCGCCauuCGAGUAUCGCg -3'
miRNA:   3'- -GAGCCGCa--G----AGCGGcu-GCUUAUAGCG- -5'
22597 3' -53.4 NC_005091.1 + 30238 0.74 0.394045
Target:  5'- --gGGCGUCgaaGCCGGCGAAgccccgCGCg -3'
miRNA:   3'- gagCCGCAGag-CGGCUGCUUaua---GCG- -5'
22597 3' -53.4 NC_005091.1 + 53642 0.73 0.440827
Target:  5'- uUCGGCGcaugguaauaCUCGCCGcACGggUA-CGCg -3'
miRNA:   3'- gAGCCGCa---------GAGCGGC-UGCuuAUaGCG- -5'
22597 3' -53.4 NC_005091.1 + 4685 0.73 0.459414
Target:  5'- uUCGGCGcUCcaugagacucucuUCGUCGGCGGAUcggcaGUCGCa -3'
miRNA:   3'- gAGCCGC-AG-------------AGCGGCUGCUUA-----UAGCG- -5'
22597 3' -53.4 NC_005091.1 + 54012 0.7 0.606588
Target:  5'- -cCGGCGUCUCGCuuuuccagcgCGACGGcgcacguuuucacGUAuuUCGCu -3'
miRNA:   3'- gaGCCGCAGAGCG----------GCUGCU-------------UAU--AGCG- -5'
22597 3' -53.4 NC_005091.1 + 30692 0.7 0.60768
Target:  5'- gCUCGGUGUUgucgUCGCCGGuauaGGUGUCGUg -3'
miRNA:   3'- -GAGCCGCAG----AGCGGCUgc--UUAUAGCG- -5'
22597 3' -53.4 NC_005091.1 + 29349 0.7 0.61861
Target:  5'- cCUCGGUcaggGUCUUGCCGGC-----UCGCa -3'
miRNA:   3'- -GAGCCG----CAGAGCGGCUGcuuauAGCG- -5'
22597 3' -53.4 NC_005091.1 + 11805 0.7 0.629552
Target:  5'- aUCGGcCG-CUCGCCGuCGAGUAgagGCc -3'
miRNA:   3'- gAGCC-GCaGAGCGGCuGCUUAUag-CG- -5'
22597 3' -53.4 NC_005091.1 + 16341 0.7 0.651432
Target:  5'- gCUCGGCGcgUUCGUCG-CGAGcggCGCa -3'
miRNA:   3'- -GAGCCGCa-GAGCGGCuGCUUauaGCG- -5'
22597 3' -53.4 NC_005091.1 + 9964 0.69 0.673242
Target:  5'- uUCGGUGUagcCGCCGuCGAGgaugAUCGUc -3'
miRNA:   3'- gAGCCGCAga-GCGGCuGCUUa---UAGCG- -5'
22597 3' -53.4 NC_005091.1 + 29134 0.69 0.673242
Target:  5'- --aGGCGUCaCGCCGACGAAcgGUUu- -3'
miRNA:   3'- gagCCGCAGaGCGGCUGCUUa-UAGcg -5'
22597 3' -53.4 NC_005091.1 + 15130 0.69 0.694898
Target:  5'- -gCGGCGggUCUCGuccCCGAucCGggUAUCGUc -3'
miRNA:   3'- gaGCCGC--AGAGC---GGCU--GCuuAUAGCG- -5'
22597 3' -53.4 NC_005091.1 + 22905 0.69 0.694898
Target:  5'- -gCGGCG-UUCGCUc-CGGAUAUCGCc -3'
miRNA:   3'- gaGCCGCaGAGCGGcuGCUUAUAGCG- -5'
22597 3' -53.4 NC_005091.1 + 14890 0.69 0.694898
Target:  5'- -gCGGCGggUCUCGuccCCGAucCGggUAUCGUc -3'
miRNA:   3'- gaGCCGC--AGAGC---GGCU--GCuuAUAGCG- -5'
22597 3' -53.4 NC_005091.1 + 38244 0.69 0.694898
Target:  5'- aUCGGuCGUCUCGCCcGGCaGGGccagCGCc -3'
miRNA:   3'- gAGCC-GCAGAGCGG-CUG-CUUaua-GCG- -5'
22597 3' -53.4 NC_005091.1 + 15010 0.69 0.694898
Target:  5'- -gCGGCGggUCUCGuccCCGAucCGggUAUCGUc -3'
miRNA:   3'- gaGCCGC--AGAGC---GGCU--GCuuAUAGCG- -5'
22597 3' -53.4 NC_005091.1 + 23244 0.69 0.699203
Target:  5'- -gCGGCGcguucgcaaaccagCUCGCCGACGcacugCGCg -3'
miRNA:   3'- gaGCCGCa-------------GAGCGGCUGCuuauaGCG- -5'
22597 3' -53.4 NC_005091.1 + 49798 0.69 0.705642
Target:  5'- aUCGGCuUCU-GCCGAUGcg-AUCGCc -3'
miRNA:   3'- gAGCCGcAGAgCGGCUGCuuaUAGCG- -5'
22597 3' -53.4 NC_005091.1 + 30042 0.69 0.716314
Target:  5'- gUCGGUGaUCUCGaCCG-CGAAggGUaCGCa -3'
miRNA:   3'- gAGCCGC-AGAGC-GGCuGCUUa-UA-GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.