miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22597 5' -51.1 NC_005091.1 + 10440 0.66 0.937972
Target:  5'- cGCGCcGUCcUCGAUgUCGggcGCGCGAc- -3'
miRNA:   3'- -CGCGaCAGuGGCUAaAGC---UGCGCUuc -5'
22597 5' -51.1 NC_005091.1 + 32311 0.66 0.937972
Target:  5'- cGCGagaUGUcCGuuGA---CGACGCGAAGg -3'
miRNA:   3'- -CGCg--ACA-GUggCUaaaGCUGCGCUUC- -5'
22597 5' -51.1 NC_005091.1 + 40664 0.66 0.937447
Target:  5'- uGCGCacgaUGUCgaaaccgGCCGugcUCGGCGCGGGa -3'
miRNA:   3'- -CGCG----ACAG-------UGGCuaaAGCUGCGCUUc -5'
22597 5' -51.1 NC_005091.1 + 41304 0.66 0.934778
Target:  5'- aGCGCUGUUACaGAagUCGAgaucgaccggcacgcCGCGAu- -3'
miRNA:   3'- -CGCGACAGUGgCUaaAGCU---------------GCGCUuc -5'
22597 5' -51.1 NC_005091.1 + 5548 0.66 0.932592
Target:  5'- uUGCagGUUcuCCGAcUUCGGCGCGAAc -3'
miRNA:   3'- cGCGa-CAGu-GGCUaAAGCUGCGCUUc -5'
22597 5' -51.1 NC_005091.1 + 40573 0.66 0.932038
Target:  5'- cGCGCcGagcacgGCCGGUUUCGACaucgugcgcaucuGCGAAGu -3'
miRNA:   3'- -CGCGaCag----UGGCUAAAGCUG-------------CGCUUC- -5'
22597 5' -51.1 NC_005091.1 + 976 0.66 0.930922
Target:  5'- cGCGCUGaUCuCCGucccgcaggccugcUCGACGCGGGc -3'
miRNA:   3'- -CGCGAC-AGuGGCuaa-----------AGCUGCGCUUc -5'
22597 5' -51.1 NC_005091.1 + 49049 0.66 0.926927
Target:  5'- cGCGCUGcugcgCACCGugugCGG-GCGggGc -3'
miRNA:   3'- -CGCGACa----GUGGCuaaaGCUgCGCuuC- -5'
22597 5' -51.1 NC_005091.1 + 46103 0.66 0.926927
Target:  5'- cCGCUcUCGCUGcgUUCcGGCGCGGu- -3'
miRNA:   3'- cGCGAcAGUGGCuaAAG-CUGCGCUuc -5'
22597 5' -51.1 NC_005091.1 + 31141 0.66 0.920977
Target:  5'- uGCGCUGgCGCUG--UUCGAgcUGCGAAu -3'
miRNA:   3'- -CGCGACaGUGGCuaAAGCU--GCGCUUc -5'
22597 5' -51.1 NC_005091.1 + 44758 0.67 0.901427
Target:  5'- cCGC-GUCAaggacgaaaagUCGAUggaCGACGCGAAGg -3'
miRNA:   3'- cGCGaCAGU-----------GGCUAaa-GCUGCGCUUC- -5'
22597 5' -51.1 NC_005091.1 + 9285 0.67 0.901427
Target:  5'- cGCGCgauucggGUCGCCGGcugcacggCGACGCa--- -3'
miRNA:   3'- -CGCGa------CAGUGGCUaaa-----GCUGCGcuuc -5'
22597 5' -51.1 NC_005091.1 + 45929 0.67 0.879385
Target:  5'- gGUGUUG-CGCCGcg-UCGAUGCGcAGg -3'
miRNA:   3'- -CGCGACaGUGGCuaaAGCUGCGCuUC- -5'
22597 5' -51.1 NC_005091.1 + 6456 0.68 0.863369
Target:  5'- cGCGCUG-CGCUGAaggaagcaGGCGCGAc- -3'
miRNA:   3'- -CGCGACaGUGGCUaaag----CUGCGCUuc -5'
22597 5' -51.1 NC_005091.1 + 7273 0.68 0.858368
Target:  5'- uCGCUGcUCGCCGccauccgucuugcucGUgUCGGCGCGGGu -3'
miRNA:   3'- cGCGAC-AGUGGC---------------UAaAGCUGCGCUUc -5'
22597 5' -51.1 NC_005091.1 + 37167 0.68 0.854985
Target:  5'- aCGCUcacGUC-CCGugacUUCGACGCGGAa -3'
miRNA:   3'- cGCGA---CAGuGGCua--AAGCUGCGCUUc -5'
22597 5' -51.1 NC_005091.1 + 10378 0.68 0.84636
Target:  5'- gGCGCgGaUACCGccUUCGGCGaCGAAGc -3'
miRNA:   3'- -CGCGaCaGUGGCuaAAGCUGC-GCUUC- -5'
22597 5' -51.1 NC_005091.1 + 49813 0.69 0.819133
Target:  5'- uGCGa--UCGCCGcgUUCGugGCGGc- -3'
miRNA:   3'- -CGCgacAGUGGCuaAAGCugCGCUuc -5'
22597 5' -51.1 NC_005091.1 + 26202 0.69 0.819133
Target:  5'- uGCGCUGUga--GAUcuUUCGACGCGgcGg -3'
miRNA:   3'- -CGCGACAguggCUA--AAGCUGCGCuuC- -5'
22597 5' -51.1 NC_005091.1 + 17070 0.69 0.809639
Target:  5'- uGCGCgUGcUC-UCGAccUCGGCGCGAAGu -3'
miRNA:   3'- -CGCG-AC-AGuGGCUaaAGCUGCGCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.