miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22598 3' -52.6 NC_005091.1 + 13401 0.66 0.888503
Target:  5'- aGCGCGUUCGccuACGaccuCGAUCGGUGGuACg -3'
miRNA:   3'- cCGUGCAAGU---UGU----GCUGGCCGCU-UGa -5'
22598 3' -52.6 NC_005091.1 + 49838 0.66 0.888503
Target:  5'- uGCGCGUUgAGCGCGGCacucagGGC-AACg -3'
miRNA:   3'- cCGUGCAAgUUGUGCUGg-----CCGcUUGa -5'
22598 3' -52.6 NC_005091.1 + 40636 0.66 0.881017
Target:  5'- cGGCGCGggauAC-CGACuCGGCGGcgGCg -3'
miRNA:   3'- -CCGUGCaaguUGuGCUG-GCCGCU--UGa -5'
22598 3' -52.6 NC_005091.1 + 16282 0.66 0.881017
Target:  5'- aGCACGUUCcACGucgcuUGGCCGcGCGuguACUg -3'
miRNA:   3'- cCGUGCAAGuUGU-----GCUGGC-CGCu--UGA- -5'
22598 3' -52.6 NC_005091.1 + 46739 0.66 0.881017
Target:  5'- aGGcCGCGUcgUCccgGACACGACCGcCGAgaaGCUg -3'
miRNA:   3'- -CC-GUGCA--AG---UUGUGCUGGCcGCU---UGA- -5'
22598 3' -52.6 NC_005091.1 + 45325 0.66 0.873272
Target:  5'- gGGCGCaac--GCGCGGCCGGUaGACg -3'
miRNA:   3'- -CCGUGcaaguUGUGCUGGCCGcUUGa -5'
22598 3' -52.6 NC_005091.1 + 2975 0.66 0.873272
Target:  5'- cGGgACuGUUaCAACGCaaGACCGGaCGAAUUg -3'
miRNA:   3'- -CCgUG-CAA-GUUGUG--CUGGCC-GCUUGA- -5'
22598 3' -52.6 NC_005091.1 + 22771 0.66 0.870103
Target:  5'- aGGCGCGUgcgcucggcaucgaUCAcgaGCACGgacguuucgaagaACCGGCGcGGCg -3'
miRNA:   3'- -CCGUGCA--------------AGU---UGUGC-------------UGGCCGC-UUGa -5'
22598 3' -52.6 NC_005091.1 + 27879 0.66 0.865275
Target:  5'- aGCGCGUguaccUCG--ACGGCCGGcCGAugUa -3'
miRNA:   3'- cCGUGCA-----AGUugUGCUGGCC-GCUugA- -5'
22598 3' -52.6 NC_005091.1 + 25782 0.66 0.865275
Target:  5'- gGGCACGUUCcuCGCGAU---CGAACa -3'
miRNA:   3'- -CCGUGCAAGuuGUGCUGgccGCUUGa -5'
22598 3' -52.6 NC_005091.1 + 21182 0.66 0.865275
Target:  5'- aGGUAUGcgCGGCGCGACU-GCGAGu- -3'
miRNA:   3'- -CCGUGCaaGUUGUGCUGGcCGCUUga -5'
22598 3' -52.6 NC_005091.1 + 33177 0.66 0.857033
Target:  5'- aGCGCGUUau---CGGCCGccGCGAGCUg -3'
miRNA:   3'- cCGUGCAAguuguGCUGGC--CGCUUGA- -5'
22598 3' -52.6 NC_005091.1 + 5135 0.66 0.857033
Target:  5'- cGGUACGgcc-GCAUGACagacaGGUGAGCg -3'
miRNA:   3'- -CCGUGCaaguUGUGCUGg----CCGCUUGa -5'
22598 3' -52.6 NC_005091.1 + 47444 0.66 0.857033
Target:  5'- aGCGCGUgucguUCcGCACGAgCGGC-AGCg -3'
miRNA:   3'- cCGUGCA-----AGuUGUGCUgGCCGcUUGa -5'
22598 3' -52.6 NC_005091.1 + 12393 0.67 0.848553
Target:  5'- aGCGCGUgCAGCucguggAUGACUGGCGcAACc -3'
miRNA:   3'- cCGUGCAaGUUG------UGCUGGCCGC-UUGa -5'
22598 3' -52.6 NC_005091.1 + 54519 0.67 0.848553
Target:  5'- -aCACGUcCGACACGGaaggCGGCGAAa- -3'
miRNA:   3'- ccGUGCAaGUUGUGCUg---GCCGCUUga -5'
22598 3' -52.6 NC_005091.1 + 38252 0.67 0.848553
Target:  5'- uGCAUGUUCAAgccgugugcCACGgacGCCGGaUGAACg -3'
miRNA:   3'- cCGUGCAAGUU---------GUGC---UGGCC-GCUUGa -5'
22598 3' -52.6 NC_005091.1 + 17936 0.67 0.848553
Target:  5'- cGGUagACGgcCGGCGCGACgGGUGuGCg -3'
miRNA:   3'- -CCG--UGCaaGUUGUGCUGgCCGCuUGa -5'
22598 3' -52.6 NC_005091.1 + 50251 0.67 0.839843
Target:  5'- gGGCAgGUcgaUUuuCGCGACCGGCauuGCg -3'
miRNA:   3'- -CCGUgCA---AGuuGUGCUGGCCGcu-UGa -5'
22598 3' -52.6 NC_005091.1 + 40917 0.67 0.839843
Target:  5'- cGGCGCuUUCGGCguACGGCCGagguuGUGAACc -3'
miRNA:   3'- -CCGUGcAAGUUG--UGCUGGC-----CGCUUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.