miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22598 5' -55.1 NC_005091.1 + 3544 0.66 0.781478
Target:  5'- -gAugUCGCCGUCugccaGUUCGAcCgGGUCa -3'
miRNA:   3'- cgUugAGCGGCAG-----CGAGCUuGaCCGG- -5'
22598 5' -55.1 NC_005091.1 + 4621 0.66 0.781478
Target:  5'- -----gCGCCGaaaG-UCGAACUGGCCg -3'
miRNA:   3'- cguugaGCGGCag-CgAGCUUGACCGG- -5'
22598 5' -55.1 NC_005091.1 + 41700 0.66 0.781478
Target:  5'- aCGACgCGUCaucacgCGCUCGAACUGcGCa -3'
miRNA:   3'- cGUUGaGCGGca----GCGAGCUUGAC-CGg -5'
22598 5' -55.1 NC_005091.1 + 10912 0.66 0.780494
Target:  5'- cGCAGCgcguacggGUCGUCGCUgcCGAGugcaaugcgcgccUUGGCCg -3'
miRNA:   3'- -CGUUGag------CGGCAGCGA--GCUU-------------GACCGG- -5'
22598 5' -55.1 NC_005091.1 + 2773 0.66 0.779509
Target:  5'- gGCGGCUCaUCGaaguaaaagaagCGCUCGGGCUG-CCg -3'
miRNA:   3'- -CGUUGAGcGGCa-----------GCGAGCUUGACcGG- -5'
22598 5' -55.1 NC_005091.1 + 30280 0.66 0.771573
Target:  5'- uGCucgauCUCGUCGUCGgugaaaUCGAAC-GGCUu -3'
miRNA:   3'- -CGuu---GAGCGGCAGCg-----AGCUUGaCCGG- -5'
22598 5' -55.1 NC_005091.1 + 13060 0.66 0.771573
Target:  5'- gGCAAUaCGCCGcUCgGCcCGGACgacccgUGGCCc -3'
miRNA:   3'- -CGUUGaGCGGC-AG-CGaGCUUG------ACCGG- -5'
22598 5' -55.1 NC_005091.1 + 35311 0.66 0.771573
Target:  5'- cGCGAaaaUCGCCGcCGC----GCUGGCg -3'
miRNA:   3'- -CGUUg--AGCGGCaGCGagcuUGACCGg -5'
22598 5' -55.1 NC_005091.1 + 48813 0.66 0.771573
Target:  5'- cGCAACgcaugGCCGuaucuccgugUCGCUCGuGCagugccgcauUGGCCg -3'
miRNA:   3'- -CGUUGag---CGGC----------AGCGAGCuUG----------ACCGG- -5'
22598 5' -55.1 NC_005091.1 + 26411 0.66 0.761527
Target:  5'- cGUAGCg-GCCGg-GCgCGAGCaGGCCg -3'
miRNA:   3'- -CGUUGagCGGCagCGaGCUUGaCCGG- -5'
22598 5' -55.1 NC_005091.1 + 16578 0.66 0.761527
Target:  5'- uGCGuACcccaCGCCGUCGCUCGG--UGcGUCg -3'
miRNA:   3'- -CGU-UGa---GCGGCAGCGAGCUugAC-CGG- -5'
22598 5' -55.1 NC_005091.1 + 36620 0.66 0.761527
Target:  5'- gGCGACcgUCGCCGUCGauaCUgGAAgUGcCCg -3'
miRNA:   3'- -CGUUG--AGCGGCAGC---GAgCUUgACcGG- -5'
22598 5' -55.1 NC_005091.1 + 26053 0.66 0.75135
Target:  5'- uCAGCUCGCCG-CGCaCGcGCUGauaCCa -3'
miRNA:   3'- cGUUGAGCGGCaGCGaGCuUGACc--GG- -5'
22598 5' -55.1 NC_005091.1 + 3442 0.66 0.750326
Target:  5'- cGCua-UCGaCCGUgcugaccCGgUCGAACUGGCa -3'
miRNA:   3'- -CGuugAGC-GGCA-------GCgAGCUUGACCGg -5'
22598 5' -55.1 NC_005091.1 + 55315 0.66 0.749301
Target:  5'- aCAGCUUuGCCGcccgcgugcucgCGCUCGAAgUGGgCg -3'
miRNA:   3'- cGUUGAG-CGGCa-----------GCGAGCUUgACCgG- -5'
22598 5' -55.1 NC_005091.1 + 19303 0.66 0.745187
Target:  5'- uGCGACUugaaccacucccgagCGCCG-CGCUCGcacauGCcGGCUu -3'
miRNA:   3'- -CGUUGA---------------GCGGCaGCGAGCu----UGaCCGG- -5'
22598 5' -55.1 NC_005091.1 + 35013 0.66 0.741056
Target:  5'- cGCAgucAC-CGCauugCGCuUCGAGCUGGCg -3'
miRNA:   3'- -CGU---UGaGCGgca-GCG-AGCUUGACCGg -5'
22598 5' -55.1 NC_005091.1 + 1080 0.66 0.741056
Target:  5'- aGCAGCgCGCC--CGCgUCGAGCaGGUCc -3'
miRNA:   3'- -CGUUGaGCGGcaGCG-AGCUUGaCCGG- -5'
22598 5' -55.1 NC_005091.1 + 18988 0.66 0.741056
Target:  5'- cGCGACUgGCCGcgaUGCUCGGcggaaucguGCcGGCg -3'
miRNA:   3'- -CGUUGAgCGGCa--GCGAGCU---------UGaCCGg -5'
22598 5' -55.1 NC_005091.1 + 2119 0.66 0.741056
Target:  5'- cGCAACUgauggUGCCGguaagCGCgUCGGccgaagcggaACUGGCg -3'
miRNA:   3'- -CGUUGA-----GCGGCa----GCG-AGCU----------UGACCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.