miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22599 5' -50.7 NC_005091.1 + 10090 0.66 0.944754
Target:  5'- -cGUCGu-GCCGGGUucCAGUUCgaGGCGg -3'
miRNA:   3'- gaUAGCuuUGGCUCAc-GUCAAG--CCGC- -5'
22599 5' -50.7 NC_005091.1 + 10896 0.66 0.934384
Target:  5'- -cGUCGcuGCCGAGUGCAaugCGcGCc -3'
miRNA:   3'- gaUAGCuuUGGCUCACGUcaaGC-CGc -5'
22599 5' -50.7 NC_005091.1 + 25866 0.66 0.934384
Target:  5'- ---cCGGAuGCCGAG-GC-GUUCGGCu -3'
miRNA:   3'- gauaGCUU-UGGCUCaCGuCAAGCCGc -5'
22599 5' -50.7 NC_005091.1 + 25130 0.66 0.934384
Target:  5'- -cAUCGAcGCCcGGUGCAG--CGGCc -3'
miRNA:   3'- gaUAGCUuUGGcUCACGUCaaGCCGc -5'
22599 5' -50.7 NC_005091.1 + 7526 0.66 0.928766
Target:  5'- cCUGUCGAAucGCCG-GU-CGGcaCGGCGg -3'
miRNA:   3'- -GAUAGCUU--UGGCuCAcGUCaaGCCGC- -5'
22599 5' -50.7 NC_005091.1 + 7261 0.66 0.922253
Target:  5'- -aGUCGucaaCGGGUuccacgaGCAGUUUGGCGa -3'
miRNA:   3'- gaUAGCuuugGCUCA-------CGUCAAGCCGC- -5'
22599 5' -50.7 NC_005091.1 + 30723 0.67 0.916663
Target:  5'- -gGUCGGGAcggguCCGGGUcuccaaggcacGCAGUgcuUCGGCGc -3'
miRNA:   3'- gaUAGCUUU-----GGCUCA-----------CGUCA---AGCCGC- -5'
22599 5' -50.7 NC_005091.1 + 52216 0.67 0.910178
Target:  5'- ---aCGGAcCCGguAGUGCGGggCGGCu -3'
miRNA:   3'- gauaGCUUuGGC--UCACGUCaaGCCGc -5'
22599 5' -50.7 NC_005091.1 + 42293 0.67 0.903407
Target:  5'- -aAUCGGAACCGc--GCAGgcaGGCGa -3'
miRNA:   3'- gaUAGCUUUGGCucaCGUCaagCCGC- -5'
22599 5' -50.7 NC_005091.1 + 23362 0.67 0.903407
Target:  5'- -cGUCGGucAGCCGGGcggcaugucgcGCAGUgcgUCGGCGa -3'
miRNA:   3'- gaUAGCU--UUGGCUCa----------CGUCA---AGCCGC- -5'
22599 5' -50.7 NC_005091.1 + 57341 0.68 0.857009
Target:  5'- cCUGcCGAcGCCGGGuUGCGGgaugaUCGGCu -3'
miRNA:   3'- -GAUaGCUuUGGCUC-ACGUCa----AGCCGc -5'
22599 5' -50.7 NC_005091.1 + 45278 0.7 0.781811
Target:  5'- -cAUCGAGAUCGAGaagGCGGUcgGGCa -3'
miRNA:   3'- gaUAGCUUUGGCUCa--CGUCAagCCGc -5'
22599 5' -50.7 NC_005091.1 + 8729 0.7 0.760112
Target:  5'- -cAUCGAGaucGCCGAuaucauuGUGCAggcugcgauGUUCGGCGa -3'
miRNA:   3'- gaUAGCUU---UGGCU-------CACGU---------CAAGCCGC- -5'
22599 5' -50.7 NC_005091.1 + 44721 0.7 0.750619
Target:  5'- -cGUCG--GCCGAGUGC--UUCGGCu -3'
miRNA:   3'- gaUAGCuuUGGCUCACGucAAGCCGc -5'
22599 5' -50.7 NC_005091.1 + 33655 0.71 0.68516
Target:  5'- gCUGUCGAAAUgCGAGUGgA--UCGGCGc -3'
miRNA:   3'- -GAUAGCUUUG-GCUCACgUcaAGCCGC- -5'
22599 5' -50.7 NC_005091.1 + 40656 0.74 0.528942
Target:  5'- aUGUCGAAACCGGccGUGC---UCGGCGc -3'
miRNA:   3'- gAUAGCUUUGGCU--CACGucaAGCCGC- -5'
22599 5' -50.7 NC_005091.1 + 3770 0.75 0.465505
Target:  5'- -cGUCGGAcggACCcauGUGCAGUUCGGCc -3'
miRNA:   3'- gaUAGCUU---UGGcu-CACGUCAAGCCGc -5'
22599 5' -50.7 NC_005091.1 + 29087 1.09 0.003647
Target:  5'- uCUAUCGAAACCGAGUGCAGUUCGGCGc -3'
miRNA:   3'- -GAUAGCUUUGGCUCACGUCAAGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.